AMCG00008487


Basic Information

Item Value
gene id AMCG00008487
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2515229 ~ 2516509 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008487
ATGTCACGACTGGTGGCGGGCCTCCCTGTCCTCCCCGTGTCCCTCGGCGCTCCGGGGCAAGGCGAGGTGCTGCCCCAGGTGGCGTCGGTGGACGAGGTGAACATCCTGACGTACGGGGTGCTGCAGTTCAGCCAGACGCTGCACGACACCTACCACAGCACCAGGGCCAAGATGGCGCGCATCTCCCGCAGCCTGGACCTCAAGGAGAGCCGGCTGGGGCTGCTGGGGCGGCGCGCCGAGGACGCCAAGCGCGAGGACGAGCGGCTGAGGACGAGCGTCGCCCGGCTGGAGGTGAGGCGCGCGGGCGGTGGTCCGGTTAGGGAGGCATTTTCCAGACATGGCCGGCCTGTAACCTCTCGCCGCCGTGTCGTGCAGGCAGAGGAGGTGCGGCTGCGGCACGAGGCCCGGGGGCTCGAGGCGGTGTTCGACGCGGTGCTGCGGGACGAGCGGGCGCTGCAGGGGCAGGTGAAGGCGGTGGAGAGAGGCGTGGGCACCGCGGAGAGGGACTCGGCGCCGGCTCGGATCACCGCACTGAAGCTCTGTAGCCGCACTGCTGGAGAGGAGGTCTGCTCCTCAGCCCGGCATTCGTTTGTGCCCCCGGTACAGGAGCTGAGCCGGAGACACCAGGACACGCTGCGGGGGCTGCTGGGCCTGGTGGGGCAGCAGAAGGCCCAGCTAGAGCAGCAGGACGGGCAGCTGGAGCGACTGCAACGACTGGTGAGTGCCCGTCCTCGACCGGTTCCTCTACAGGGGCGACACAAGCCACTCCGGGGACCACACCGGCCCGGGGGGAAGGTTCACTCCAGATCAACCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008487 True 816 mRNA 0.70 3 2515229 2516509

Neighbor

gene id symbol gene type direction distance location
AMCG00008483 NA coding upstream 84448 2424395 ~ 2430781 (+)
AMCG00008485 NA coding upstream 93220 2420340 ~ 2422009 (+)
AMCG00008484 NA coding upstream 112631 2395064 ~ 2402598 (+)
AMCG00008479 pde4a,LOC107703358,LOC107725012,LOC107587971,LOC107674699,LOC107596808,LOC108243727 coding upstream 238139 2276791 ~ 2277090 (+)
AMCG00008478 NA coding upstream 257773 2256457 ~ 2257456 (+)
AMCG00008489 elavl3,LOC102780136 coding downstream 99954 2616463 ~ 2630199 (+)
AMCG00008493 NA coding downstream 199311 2715820 ~ 2720661 (+)
AMCG00008499 NA coding downstream 271359 2787868 ~ 2793880 (+)
AMCG00008498 keap1 coding downstream 282031 2798540 ~ 2811299 (+)
AMCG00008497 NA coding downstream 298887 2815396 ~ 2823096 (+)
G49431 NA non-coding upstream 50562 2445185 ~ 2464667 (+)
G49341 NA non-coding upstream 301736 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 306752 2163319 ~ 2208477 (+)
G49294 NA non-coding upstream 604810 1908823 ~ 1910419 (+)
G49270 NA non-coding upstream 666491 1815584 ~ 1848738 (+)
G49541 NA non-coding downstream 295665 2812174 ~ 2812893 (+)
G49582 NA non-coding downstream 369322 2885831 ~ 2886138 (+)
G49598 NA non-coding downstream 393153 2909662 ~ 2910628 (+)
G49599 NA non-coding downstream 394185 2910694 ~ 2910939 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 511469 3027978 ~ 3042595 (+)
G49340 cdc37 other upstream 303715 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 371835 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 407437 2088480 ~ 2107792 (+)
AMCG00008473 NA other upstream 439580 2062556 ~ 2075649 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other upstream 578727 1930654 ~ 1936502 (+)
G49523 NA other downstream 249370 2765879 ~ 2770044 (+)
G49583 smarca4,LOC102779508 other downstream 370257 2886766 ~ 2888896 (+)
AMCG00008526 NA other downstream 913388 3429897 ~ 3885604 (+)
G49980 NA other downstream 1639579 4156088 ~ 4160062 (+)
G49982 NA other downstream 1645549 4162058 ~ 4165483 (+)

Expression


Co-expression Network