AMCG00008489 (elavl3,LOC102780136)


Basic Information

Item Value
gene id AMCG00008489
gene name elavl3,LOC102780136
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2616463 ~ 2630199 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008489
ATAATCAGTACAATGGAAACTCAGGTGTCCAACGGTCCGACTTCTAACAGCATCCCCAACGGCCCTGTCATCAGCACCAACGGCTCGACGGACGACAGCAAGACGAACCTGATCGTCAACTACCTGCCACAGAACATGACCCAGGAGGAGTTCAAGAGCCTGTTCGGCAGCATCGGGGAGATCGAGTCGTGCAAACTGGTCCGAGACAAGATCACAGgtCAGAGTTTAGGCTACGGATTTGTAAATTACGTGGACCCCAATGACGCAGACAAGGCGATCAACACGCTAAACGGACTCAAACTGCAGACCAAAACGATCAAGGTGTCCTATGCCCGGCCCAGCTCAGCTTCCATCCGTGACGCCAACCTGTACGTCAGCGGGCTTCCCAAGACCATGAGCCAGAAGGAAATGGAGCAGCTGTTCTCACAGTACGGCCGGATCATCACCTCGCGCATCCTGGTGGACCAGGTCACAGGCATATCGCGAGGAGTGGGATTCATCCGGTTCGACAAGCGCAACGAGGCGGAGGAGGCGATCAAGGGGCTCAATGGGCAGAAGCCACTGGGCGCCGCCGAGCCCATCACCGTGAAATTCGCCAACAACCCCAGCCAGAAGACCGGCCAGGCCCTGCTCACACAGCTGTACCAGACGGCAGCGCGCCGCTACACTGGACCCCTGCATCACCAGACGCAGAGATTCAGACTCGACAATTTACTTAACATGAACTACGGAGTCAAGAGGTTCTCGCCCATCACCATCGACAGCATGACCAGCCTGGCGGGGGTGAACCTGACGGGGCCCACGGGGGCCGGATGGTGCATCTTCGTGTACAACCTGTCTCCCGAGGCGGACGAGAGCGTGTTATGGCAGCTGTTCGGGCCCTTCGGCGCCGTCACCAACGTCAAGGTCATCCGCGACTTCACCACCAACAAGTGCAAGGGCTTCGGCTTCGTGACCATGACGAACTACGACGAGGCGGCCATGGCCATCGCCAGCCTGAACGGCTACCGGCTGGGCGACCGCGTGCTGCAGGTGTCCTTCAAGACCAGCAAGCAGCACAAGGCGtga

Function

symbol description
elavl3 Predicted to enable RNA binding activity. Acts upstream of or within regulation of neurogenesis. Predicted to be located in viral nucleocapsid. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including nervous system; neural plate; neural tube; neuronal stem cell; and presumptive structure. Orthologous to human ELAVL3 (ELAV like RNA binding protein 3).

NR:

description
PREDICTED: ELAV-like protein 3 isoform X1

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13208 ELAVL2_3_4; ELAV like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008489 True 1068 mRNA 0.59 6 2616463 2630199

Neighbor

gene id symbol gene type direction distance location
AMCG00008487 NA coding upstream 99954 2515229 ~ 2516509 (+)
AMCG00008483 NA coding upstream 185682 2424395 ~ 2430781 (+)
AMCG00008485 NA coding upstream 194454 2420340 ~ 2422009 (+)
AMCG00008484 NA coding upstream 213865 2395064 ~ 2402598 (+)
AMCG00008479 pde4a,LOC107703358,LOC107725012,LOC107587971,LOC107674699,LOC107596808,LOC108243727 coding upstream 339373 2276791 ~ 2277090 (+)
AMCG00008493 NA coding downstream 85621 2715820 ~ 2720661 (+)
AMCG00008499 NA coding downstream 157669 2787868 ~ 2793880 (+)
AMCG00008498 keap1 coding downstream 168341 2798540 ~ 2811299 (+)
AMCG00008497 NA coding downstream 185197 2815396 ~ 2823096 (+)
AMCG00008505 NA coding downstream 274360 2904559 ~ 2906941 (+)
G49431 NA non-coding upstream 151796 2445185 ~ 2464667 (+)
G49341 NA non-coding upstream 402970 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 407986 2163319 ~ 2208477 (+)
G49294 NA non-coding upstream 706044 1908823 ~ 1910419 (+)
G49271 NA non-coding upstream 777459 1838186 ~ 1839004 (+)
G49541 NA non-coding downstream 181975 2812174 ~ 2812893 (+)
G49582 NA non-coding downstream 255632 2885831 ~ 2886138 (+)
G49598 NA non-coding downstream 279463 2909662 ~ 2910628 (+)
G49599 NA non-coding downstream 280495 2910694 ~ 2910939 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 397779 3027978 ~ 3042595 (+)
G49340 cdc37 other upstream 404949 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 473069 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 508671 2088480 ~ 2107792 (+)
AMCG00008473 NA other upstream 540814 2062556 ~ 2075649 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other upstream 679961 1930654 ~ 1936502 (+)
G49523 NA other downstream 135680 2765879 ~ 2770044 (+)
G49583 smarca4,LOC102779508 other downstream 256567 2886766 ~ 2888896 (+)
AMCG00008526 NA other downstream 799698 3429897 ~ 3885604 (+)
G49980 NA other downstream 1525889 4156088 ~ 4160062 (+)
G49982 NA other downstream 1531859 4162058 ~ 4165483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_00122344_00130639 ELAVL3 coding CI01000113 null 121854 ~ 130707 (-)