AMCG00008491 (prkcsh,LOC102779661)


Basic Information

Item Value
gene id AMCG00008491
gene name prkcsh,LOC102779661
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2636915 ~ 2702422 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008491
ATGCAGCGTTCCCTCGTGGCCCAGATCTCGGGCGCCGATAAGGATTTccaggtgctgctgctgctgctgctgctgcaaaacAACAGCTCTCTGCTCCGGGACGAGGGGGAGAGGGAGCTCTCTGCCCAGAAGGCCCGGTCTGAATTCGAAGATGCCGAGAAAGCTCTCCGGGAAGTGGAGGATCAGATCAAGTAAGTGGATCCATCGATGTCTCTGTCTGTGCGCCGCCCTGGCTGTCGTGGGCTTCCAACAAACCCGTTTGGCTAATGGGGTTCAGGGCACAGTACATCTACAGACTCTGCCCATTCAACCGTGTGTCGCAGAAGTCCAAATTCGGTGGATCGGAAACCAACCTGGGGTCGTGGGGCTCGTGGTTCGGCCCAGAGGACGACAAATACTCCATCATGAAGTACGAGCACGGCACGGGCTGCTGGCAGGGGCCCAGCCGGTCCACCACGGTGAAGCTCAGCTGTGGAAAGGACACCACTGTTGTGTCCGCCACCGAGCCCAGCCGCTGTGAGTACCTCATGGAGTTCACCACCCCCGCCATCTGCAAGGAGCCCCCGCCCTCCGACCCATCCCCCCACGACGAGTTCTAGGCCCGATTGGGTCTGGAAAACTGGGAACACACGTACACTGAAGAAGACGCGAAGATGCTTCAACCTTTCTCctcttgaaaagaaaaaacaaagaaaagaaataaggacaaaaaaaaaaagcaacaagaagaaaaataacccCAGTAGTGAGAGGCTGTCGCTCCCTGCTTCCCCCCCGAGCCGACCTCTGACCCCGGGATCTGGGCAGCTCGCGGTCTGggagggtttttgtttttactgtagaGAAATCAAGAATCACAAAAGATGCTTTGAGCCGCGCCGGCGGGCGTGTGACTGGCAGTGCGCTGAAGGAGCGTTTGTTCTGCCCGCGGCCCCGGTGACTCTCGCGCCGCACACGGATTCTTCCTCTCCATTTGTCACTTCGTTTCTttttccttcctccctcccaACACAACTCTTATTTTCCAGTCGCTTTGCTTTtactaattatttttatttccttatctTAGCGTTTATTGATGTGATGGCACTACTGGGCGGAGGTGAACTCTCGGGGTTGACCTCTTCGGGGCTTGTGTGACCCTTGACCTTTGCTACTGTTCTCTGCGGGGGGGCAGCCAGGTTCGGGATGTTTACACACTAAAAGCGTAGGAGATTTATTTGCAGCACATCGTGTACCTGCCTCCTCGAGTCGTCAATGGCTCGGCTTGGAAACCGTATTGAGATATTGGGTGTAAACACTGGGATCAGACCTGTTTAGTGAAGAATGCAGAATTGTCTCTTCCGTGTTTTttagcattttagtttttccagttAAGCCAGTCAAGTCGCACACACTGCTCCGTTTAATTGCCTCCTGTGCTTTCGCTAACATCGCGATGTGAACGatgatgtttaatttaaaaggcattttctCCTCATTTGCCTGCCTGCTTAGCTCTCTGTCTCCCGGTTCGGCGTCGGGGACGGCACTTCCTGTCTGTCCATTCTGTGTCTTCTGTAACAGACAtcacttcctgtctctctctctcggtacGTCTGCCTCTGAATCCAGCTAGATATCACCTAGACGTGGCCAGAAACTCTGATTTGCGAACGAATTAAAGAATTAACGAATGCATACTGTGATGGGGGTATTAGAGATGAATCAATGGCAAATACACATCAGTTTTGAGAGCTGAAAGtgaatttatttatgattttgaatgcaTATCGTCACACAACGGTCTAACATGTTTGTATcctgctgtggggggggggtgcatgtTCCTCAGGATCTCCTGTATGAGACTTCAGCAGCACCACGACTCGCACGACCCTAAAATGCTTGTTCTGGGTTTTTTTTGGAGTTTGATTTCTGAAATTAATCATTCCACCGTACTCCCGTCCCTTCGGATCTCGCCGGAGTCATCCCTATCACGCCTCTTCCTATCTGTGCACTTGGTGGATGAacagcctccctccctcctgtgcGGCTCCCGCTGATATCAAGCATCTCATTGTTACCTCTGCGAACGTCAGCCCCGCTTTGATGTGCGACGCTTCTCTAGTGCTGCTTTAAGTGTGTCAAAGGCTCTTTTGTGCGTCTGTCACCGTCTTTATTAGCCTGTGTTAAAACTTTGTAATTGCCATCATGATTGGctgttaatgtaaaaaaagaagagaagaaacgACATTGATCGGGCAACGGTGGCGCTGTCTGGCAGCGGCGCGGTGCGGCTCTCCTCCTGCGAGGGAGACGCGGTGGCTTCGGTCTCAGACGGGGACTTCAGACTGCGGGCCAATTtctaagtttgtttttctttccccttctttttcttttgtgctcCTTTGGtatttgaatgtgtgattcTGAATTAAAAAGCTCC
>TU61913
gtgtgtgtaagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttttttaaaagcGAGGGATTTCCCTGGTTTGGAGGGGATTTGCACACGATTGGCTCCAGTGGAATTCTCCGaaatgtttgtctctctctcccctccgcCTATGTGACGTCtcgattaaaaaaacaacaacaaatgaaagCGCTGAGACACGGGAGCCCTGGCACCGGATCGGTTCCCGGTCTCCCGGAGAGCGCCAGCCACAGATGAGCTCCTAATCCATGCTTTGTTTCGTCCGAGTTAACAAATCGTAAACGTAAATGCGGGACGTTATTGTGGCACATAAATCGTCCACCCCTTCAGAATCGACATccaggtttgtgtttttcctcccTTTCTTCTCTGTTGCGATGAATCTATGAAATCAAAGTCAATCGTGTTCGTTCATACGGGCTCTCCTCCCTCAGGTACATCTACAGACTCTGCCCATTCAACCGTGTGTCGCAGAAGTCCAAATTCGGTGGATCGGAAACCAACCTGGGGTCGTGGGGCTCGTGGTTCGGCCCAGAGGACGACAAATACTCCATCATGAAGTACGAGCACGGCACGGGCTGCTGGCAGGGGCCCAGCCGGTCCACCACGGTGAAGCTCAGCTGTGGAAAGGACACCACTGTTGTGTCCGCCACCGAGCCCAGCCGCTGTGAGTACCTCATGGAGTTCACCACCCCCGCCATCTGCAAGGAGCCCCCGCCCTCCGACCCATCCCCCCACGACGAGTTCTAGGCCCGATTGGGTCTGGAAAACTGGGAACACACGTACACTGAAGAAGACGCGAAGATGCTTCAACCTTTCTCctcttgaaaagaaaaaacaaagaaaagaaataaggacaaaaaaaaaaagcaacaagaagaaaaataacccCAGTAGTGAGAGGCTGTCGCTCCCTGCTTCCCCCCCGAGCCGACCTCTGACCCCGGGATCTGGGCAGCTCGCGGTCTGggagggtttttgtttttactgtagaGAAATCAAGAATCACAAAAGATGCTTTGAGCCGCGCCGGCGGGCGTGTGACTGGCAGTGCGCTGAAGGAGCGTTTGTTCTGCCCGCGGCCCCGGTGACTCTCGCGCCGCACACGGATTCTTCCTCTCCATTTGTCACTTCGTTTCTttttccttcctccctcccaACACAACTCTTATTTTCCAGTCGCTTTGCTTTtactaattatttttatttccttatctTAGCGTTTATTGATGTGATGGCACTACTGGGCGGAGGTGAACTCTCGGGGTTGACCTCTTCGGGGCTTGTGTGACCCTTGACCTTTGCTACTGTTCTCTGCGGGGGGGCAGCCAGGTTCGGGATGTTTACACACTAAAAGCGTAGGAGATTTATTTGCAGCACATCGTGTACCTGCCTCCTCGAGTCGTCAATGGCTCGGCTTGGAAACCGTATTGAGATATTGGGTGTAAACACTGGGATCAGACCTGTTTAGTGAAGAATGCAGAATTGTCTCTTCCGTGTTTTttagcattttagtttttccagttAAGCCAGTCAAGTCGCACACACTGCTCCGTTTAATTGCCTCCTGTGCTTTCGCTAACATCGCGATGTGAACGatgatgtttaatttaaaaggcattttctCCTCATTTGCCTGCCTGCTTAGCTCTCTGTCTCCCGGTTCGGCGTCGGGGACGGCACTTCCTGTCTGTCCATTCTGTGTCTTCTGTAACAGACAtcacttcctgtctctctctctcggtacGTCTGCCTCTGAATCCAGCTAGATATCACCTAGACGTGGCCAGAAACTCTGATTTGCGAACGAATTAAAGAATTAACGAATGCATACTGTGATGGGGGTATTAGAGATGAATCAATGGCAAATACACATCAGTTTTGAGAGCTGAAAGtgaatttatttatgattttgaatgcaTATCGTCACACAACGGTCTAACATGTTTGTATcctgctgtggggggggggtgcatgtTCCTCAGGATCTCCTGTATGAGACTTCAGCAGCACCACGACTCGCACGACCCTAAAATGCTTGTTCTGGGTTTTTTTTGGAGTTTGATTTCTGAAATTAATCATTCCACCGTACTCCCGTCCCTTCGGATCTCGCCGGAGTCATCCCTATCACGCCTCTTCCTATCTGTGCACTTGGTGGATGAacagcctccctccctcctgtgcGGCTCCCGCTGATATCAAGCATCTCATTGTTACCTCTGCGAACGTCAGCCCCGCTTTGATGTGCGACGCTTCTCTAGTGCTGCTTTAAGTGTGTCAAAGGCTCTTTTGTGCGTCTGTCACCGTCTTTATTAGCCTGTGTTAAAACTTTGTAATTGCCATCATGATTGGctgttaatgtaaaaaaagaagagaagaaacgACATTGATCGGGCAACGGTGGCGCTGTCTGGCAGCGGCGCGGTGCGGCTCTCCTCCTGCGAGGGAGACGCGGTGGCTTCGGTCTCAGACGGGGACTTCAGACTGCGGGCCAATTtctaagtttgtttttctttccccttctttttcttttgtgctcCTTTGGtatttgaatgtgtgattcTGAATTAAAAAGCTCCCGTCTCCAGACGCCTCTCTCTGTGTACCCTTGTTAACCGAGTATGTTCTTGTGGGCGTGGGAAGAGGGAGGGCGGGGGACAAACTAGCGGCTCTGTCCCTGTGGGCTTGTGGGGTTCGTGTTCGGATCTGTCGCGGGGAGGGTGAGAGATGATGGCTTTGTGATCTCCCGTGCTGGTCCTGTTTGCGCCTGGGGAGTACATTCTGAGTCCGGCAATCCACGGTAAGCTACTCCTCAACTGCAGTGATGTGTAGAAAACGGAAAAAAACCTTTACAAACACAGACTATACTTCACCAGAAAGACACAAGCAGAGTGCGTGGTTCGACatgaaactatttatttctaaataaaggGAGTCATTTTTAATGCACATCAAATCCAATCAAACTCCATTCGATTTCAAAATGGGCGCGTCGCATTCAAACGACAATTGCGGACTCTGTGTCCGAGGTGGGACGGGGAGGAGCACGCACGCTTGTCTCTCTTCAGGCACGTGCAAGTTGGCTGTATCTTCAGATTGTAAAGGCACAGATGAAACCTGAAAaccaaatgacttcctgtacaAGGGCGGCTGGGGACCGAGCCCATGTGGTCCCTGCACGCCTGTCCTCACCCCTGTCCTGTGCCAGTCCCCCTGTGAGTCCCCTGGGGCAGAATGGAGGATCTGGATGGCTTAGATTGATGTCTGGATTGAAGTGACCCAATCTTACCAGGACCCGTTGTGTAGCCCGTCTACTGTTCTACTATAAACTTGAATTGACATCCAAGAGCAGCACGTAGGTGTGGAAGAAAGATTCGACTTCCTGGCCAGGCCTGATGTGTCTGAAGTGGCACAGGACTGGGAGGTTCGATGACACCAGGAACACGTACATTGGATGAGCTTTCCGCTTCATGAGATCCCTTACAGCCCAGCGAGAGCTCATGTCGTTCGGGGACGAGAGGATGtgaaacatttattaacttcTCGTGCTTTTCTCCTTAGTGTTGTGCGTTTTAGAAGTTTCTCTGTGTGAATCAGACGGCATGAGGAAACCCGGGTACAGAGTGAATATTCAATGCCGCGGCTTCCAATCCCCGAGTCCCAGCGCCATGGTGGTACGACTGACAGGGCCTGGAACGTGAGGGAACACactttgtgggttttttttctGGGGACACCTCTCGGTTCAACCTCAAATGAGCTGGGGAGTTTCTAGTGGAACTAAAAAAAACCTCCCAAGATGCACTTGGTGTAAGCAGGTACACTGGTGTGGCAGACAAGCTGtcatggtttaattaaacaattacacaattacGCCTGACCCCAGACCATTGTGGAAGATGACCCATCGCCTGTGTCTTCAGCCTTTTGTGCACTTGGGGGGGAGGGACGTCCTTCGTCCGTGTGTCTTTGTGCATCTCTGtgagtctctctgtgtcttgtgtgtggCACGATCTGATGTTGCTGTGTGGTTGTTCATGGGACAGTAAAAACTGGACCCAACCCATCTCTGTAATGTTCTAagacag

Function

symbol description
prkcsh Predicted to enable calcium ion binding activity and kinase activity. Acts upstream of or within liver development and pronephros development. Predicted to be located in endoplasmic reticulum. Predicted to be part of glucosidase II complex. Used to study polycystic liver disease. Human ortholog(s) of this gene implicated in liver disease and polycystic liver disease. Orthologous to human PRKCSH (protein kinase C substrate 80K-H).

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0006491 N-glycan processing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008491 False 2428 mRNA 0.51 7 2638424 2647417
TU61913 True 4118 lncRNA 0.50 5 2636915 2702422

Neighbor

gene id symbol gene type direction distance location
AMCG00008488 NA coding downstream 101554 2489877 ~ 2535361 (-)
AMCG00008486 NA coding downstream 191703 2438709 ~ 2445212 (-)
AMCG00008480 NA coding downstream 424078 2208173 ~ 2212837 (-)
AMCG00008481 NA coding downstream 433472 2172836 ~ 2203443 (-)
AMCG00008482 NA coding downstream 464242 2169331 ~ 2172673 (-)
AMCG00008494 NA coding upstream 7120 2709542 ~ 2710591 (-)
AMCG00008496 NA coding upstream 20052 2722474 ~ 2727124 (-)
AMCG00008495 fdx1l coding upstream 29465 2731887 ~ 2734504 (-)
AMCG00008503 NA coding upstream 108939 2811361 ~ 2814023 (-)
AMCG00008501 NA coding upstream 122039 2824461 ~ 2832172 (-)
G49462 NA non-coding downstream 200158 2377005 ~ 2436757 (-)
G49419 NA non-coding downstream 276803 2359860 ~ 2360112 (-)
G49414 NA non-coding downstream 400054 2236527 ~ 2236861 (-)
G49393 NA non-coding downstream 561267 2068083 ~ 2075648 (-)
G49394 NA non-coding downstream 566043 2069790 ~ 2070872 (-)
G49547 NA non-coding upstream 120819 2823241 ~ 2823976 (-)
G49606 NA non-coding upstream 207240 2909662 ~ 2910628 (-)
G49614 NA non-coding upstream 272527 2974949 ~ 2975153 (-)
G49802 NA non-coding upstream 671122 3373544 ~ 3379324 (-)
G49806 NA non-coding upstream 687781 3390203 ~ 3392090 (-)
AMCG00008474 NA other downstream 551890 2073783 ~ 2085025 (-)
G49375 NA other downstream 755953 1879621 ~ 1880962 (-)
AMCG00008462 NA other downstream 777424 1798845 ~ 1859491 (-)
AMCG00008466 NA other downstream 796816 1819774 ~ 1840099 (-)
AMCG00008452 NA other downstream 981436 1629854 ~ 1655479 (-)
G49605 NA other upstream 204253 2906675 ~ 2908665 (-)
AMCG00008554 NA other upstream 728392 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other upstream 1067262 3769684 ~ 3777354 (-)
AMCG00008602 NA other upstream 2884653 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 2953267 5655689 ~ 5786328 (-)

Expression


Co-expression Network