AMCG00008493


Basic Information

Item Value
gene id AMCG00008493
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2715820 ~ 2720661 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008493
GCGGGGCGGCGTTTCCCGGAAAGAGTCCGGAGCCGGTCGAGGGGGACCCGGAAGAGCGGCCGGCGTTCTAGAACGAGCAACATGGCGCCGCCCAGTGAGGCGCGTCTGAAGGAGAGCGGGTATCGCGGCCGATACATGTCTGCGACTATTTAGTGTGTAACCATGAGCCGCGCACGGTTTCTGACGCTGGCGCAGGAGCTCGGCACCCTGGTGCCCAGAGCCAGGGCGGCTGCTCTGAGTGCAGCTGCACACCGAGTTCCCACAGCAGCCTTCCCCAACACAGGAAACGCACGCTACGGCCCGTCGGCGTTGAGATGTTTCCACAGGAGCAGCAGGTTGGCGGAGATGAAACCCACCTGTACGGACGGCGGGCAATCGGGAATTGAGACGGGCAGATCCCTGGCCACCCCTGAAGACCTGTTCGAGCGGTTGGCCCGGGACTCCAGGACCAAGGCCACGTTCAACCGGGTGCTGGACACGTTCGTGAAGCGGGACGTCCGCCGGCGGGGCCACGTGGAGTTCATCTACGCGGCGCTGAGCAAGATGCCGGAGTTCGGCGTGGAGCGGGACCTGTCCGTCTACAACAAGCTGCTGGACGTCTTCCCCAAAGAGGTATACGTTTGcctgttttatttctctctctctcacacagggATCATGCCCAACGTGGAGACCAAAGTCCTCCTCGTCCAGATCTTCGGGCTGAAGGGCCACCCCGTACGCAAATACCAGCGCCTCCTGTACTGGTTCCCACGGTTCAAGAACATCAACCCCTACCCGCTCCCAGAGCAGCTCCCGCAGGACCCCCTGGACCTGGCGCGCCTCAGCCTGGCGCGCATAACCGACAACCTGGACGCCGAGGTCACGGTGTACCAGATGCCCTACAGCGACGTCTCCGACGCGGGAGAAGAAATCTCCCAGCCGCACATCGTAGgcattCAGAGTCCGCAGCAGCGCTCCCTGCTGGCCAGGCACAACCCCAGCCGGCCCGTGTTCGTGGAGGGCCCATTCCCGCTGTGGCTGAGGAAGACCTGCGTGTTTTACTACGTCCTCCGGGCCGACCCCCCGCCGCCCCAGGAACAGGTGGAGGAGCCCCTGGACCCCGAGAGGAGCCTCTACTACCCCCTGGTGCTGGACCTGGACTTGGACCGACACCTGGGGGACGACGACCGCTTCGAGGTGGACGAAGTGGCGGAGGGCCCCGTGTTCGCGATGTGCATGGCGGGCTCCGGGGACCAGGCCACGCTGTTCAAGTGGATCTCCGGCCTCCAGGAAACCAACCCGGTGCTGGGCAGAACCCCCACGGTGTTCCGGCTGGAGTCCGTCCCGCGAGAGATCCAGAGCGCCGCCGAGGCTGCCGTGGAGGAGGAGCACCCCCGCAGCCAGGGCATGAAGCAGTGAGAGCACGGGACCGAGCAGCGCTGGACTCGCATCGCCTGGCTTCTCTCACGGCAGGAGCAGGATGATTTGCCCAGAAGTGTGTTGGCAGCATCACAACGGTCATTTGTGCAGCTTGTCACACCCCCAGTTAAGGggtctgtaaataaaataaccccATCTCAGATCCACACGAGAAAACGGTTTCTGTAGTGCATGTTGTCCGCTGTCCTTGATAACAATTTGGAACTAATCGCCAATAAGTAACGAATAATCTGACGGTTGGCTTTATTTTCTCTGGATTTTCTCCGTATTTCAGGTCCAATCCAGAGAATAATAACTGCCGGCATTTGGAAGTTAAGTCTCCCTCCAAACCTCAAGGACTCTCGTGTCAGCATCTGCATTTCCGCCTCGAGGAATAAACAATGTCTTTACTGTTCA

Function

GO: NA

KEGG:

id description
K04405 ECSIT; evolutionarily conserved signaling intermediate in Toll pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008493 True 1818 mRNA 0.61 8 2715820 2720661

Neighbor

gene id symbol gene type direction distance location
AMCG00008489 elavl3,LOC102780136 coding upstream 85621 2616463 ~ 2630199 (+)
AMCG00008487 NA coding upstream 199311 2515229 ~ 2516509 (+)
AMCG00008483 NA coding upstream 285039 2424395 ~ 2430781 (+)
AMCG00008485 NA coding upstream 293811 2420340 ~ 2422009 (+)
AMCG00008484 NA coding upstream 313222 2395064 ~ 2402598 (+)
AMCG00008499 NA coding downstream 67207 2787868 ~ 2793880 (+)
AMCG00008498 keap1 coding downstream 77879 2798540 ~ 2811299 (+)
AMCG00008497 NA coding downstream 94735 2815396 ~ 2823096 (+)
AMCG00008505 NA coding downstream 183898 2904559 ~ 2906941 (+)
AMCG00008509 NA coding downstream 274280 2994941 ~ 3003560 (+)
G49431 NA non-coding upstream 251153 2445185 ~ 2464667 (+)
G49341 NA non-coding upstream 502327 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 507343 2163319 ~ 2208477 (+)
G49294 NA non-coding upstream 805401 1908823 ~ 1910419 (+)
G49271 NA non-coding upstream 876816 1838186 ~ 1839004 (+)
G49541 NA non-coding downstream 91513 2812174 ~ 2812893 (+)
G49582 NA non-coding downstream 165170 2885831 ~ 2886138 (+)
G49598 NA non-coding downstream 189001 2909662 ~ 2910628 (+)
G49599 NA non-coding downstream 190033 2910694 ~ 2910939 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 307317 3027978 ~ 3042595 (+)
G49340 cdc37 other upstream 504306 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 572426 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 608028 2088480 ~ 2107792 (+)
AMCG00008473 NA other upstream 640171 2062556 ~ 2075649 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other upstream 779318 1930654 ~ 1936502 (+)
G49523 NA other downstream 45218 2765879 ~ 2770044 (+)
G49583 smarca4,LOC102779508 other downstream 166105 2886766 ~ 2888896 (+)
AMCG00008526 NA other downstream 709236 3429897 ~ 3885604 (+)
G49980 NA other downstream 1435427 4156088 ~ 4160062 (+)
G49982 NA other downstream 1441397 4162058 ~ 4165483 (+)

Expression


Co-expression Network