AMCG00008499


Basic Information

Item Value
gene id AMCG00008499
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2787868 ~ 2793880 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008499
ATGCGCAGTAACCCGGCACGGTGCCGCTGCGGGACAGGGGGTGCCAAGGAAGACACGACACGGCTTTCTGTAGTTTTCGGCAAACTTGTTTGTTCACTCCAGAGCGACCCAGTGAACGCACAGCCGGCAGAACAGCCCTCCCTGCACAACGCTACGATACCGGCTCCCTCTTGTGGTCACACGGGGTCCATGTAATTCCAAAATAAAGTGCGGAGAAAAAGAGGAAACCTGTAAGCGCTGGACTGGGGCCGGATTGCACACCTCGCCTCTCTGCATTCGGTTCTGCAGTTTGGGGCGGCGAAACGGGGCCAGAACTGGTTATATCCCAACGCAGGTTATCATTCTACCGGGaagctgtgatttttttccctttgctgATATTTTTGTGGCAGTTGGTGTCTTTGGCCAGCCCGCTCGTGCCTTCTCTGTTATGAGTGACATTTAAAGGGCTATCAGAACAAACCCCCCTGCAGCCCCCCGAGAGCGGCAGCATGGAGGTGACGCCCACCATGGTGACCCCCGGGGCCCCGGCGCGGCGGCTCTTGCGCGTCTTCCGGGAGTACCACAACAATGCCATCATCATGGAGCACTACAACTACACGGGCAAGCTGAGCGGGAACCGGTACAAGGACGGCCTGAAGCCAGAGGCCATCATCTTCCTCATCATCTGCCTGCTCATCGTGGCGGAGAACTCGGTGGTGCTCATCGCCATCTGGAGGAACAAGAAGTTCCACCTGCCCATGTACTACCTGCTGGGCAACCTGACGCTGTCCGACCTGCTGGCCGGCTTCACCTACATGGTGAACATCGTGTTGTCGGGGCCCAACACGCTCAAGCTGACGCCGCTGCTGTGGTTCCTGCGGGAGGGCGGGGTGTTCATCACGCTGGCCGCCTCCATCATCAGCCTGCTGGCCATCGCCATCGAGCGCCACGTCACCATGGTGAAGATGAAGCCCTACCACGGCGCCAAGAAGGGCCGCATGTTTGCCCTGATCGGCGCCAGCTGGGTGCTGTCGGTCTTCCTGGGGGTGCTGCCCATCATGGGCTGGAACTGCATCGAGTCTCTGGAGGAGTGCTCCACCGTGCTGCCCCTCTACTCCAAGAGCTACATCCTCTTCTGCATCACCATCTTCATGGCCATCCTGCTGGCCATCACCGTGCTCTACGTCCGGGTCTTCCGCATCGTCAAGACCAACACGCAGCGCATGGGCACCCTCCGCAAGGGCATGGCCCGTAAGTCCCAGAAGTACATGGCGCTGCTGAAGACGGTCACCATCGTGCTGGGTGTCTTCATCGCCTGCTGGCTGCCCCTCTTCATCCTCCTGCTGCTGGACTTCTGCTGCCAGGTGCAGCACTGCGAGATCCTGTTCAAGGCGGACTACTTCCTGGGCATCGCCATGGTGAACTCCCTGCTCAACCCCATCATCTACACTCTCACCAGCCGGGACATGAGGAGAGCCATCCTGCGGCTCCTGTGCCGGCAGTGTCTGATCTCCAAGGATGGGCAGGTGAAGAAGTTCGGCGTCCCCTTCCTGGAGTGCAGCACCAGCAAGTCAGAGGTCATCTCCCACCGGCTGGAGGGCCTGGAGACGACGCTGTCCTCGGGCAACGTCACGCCCTCCACCATCAAGGCGCTGTACCCGCGGATCCTGAAGAGCTGAGTGCGCCGGCCTCAGCTCCCATCTCATGGGTCCACCTTCACGCACGAAGCAAGAGCTCTGGGCTGCGGAGGACGGCTCGTTTGGTTTTTGTTCTCAACGTTGTGTCCTGAGGTTTGGGTGCAAACCTGTGTAGGACACTAAAAAAAGACTTGCCGACTCCAGGGGCACCAAACCAATCCCAGTTGCAAACTCAAAGCATCAGTGTTACATAGTCTTGAGATTTGGTGGCCCCTTAACTCCCACCCACAAGAGGTAGCATTTGTTCTAACGCAAGTCTTCTGCCAATGACTGCCATTGTGCTCCAGCAGTAGGATGTGACTGGCCCACTGTAGCCAAAGACAGGGCTCGAGGGGTTGTAAAGTTCCTCCTCTGTCATCGGGACAATCCCAGCTTCCAGACCACATGTGTCTGACGTGCACAGTCCCAGAGAAACCGTTCTCCAGATGCATCGCCTCATCAGAAGACAGATGAAAAGGTGGGACTCTGGATCGTGAGCAATATACGATCATCAAGAGGGgaacttaaaaatgaaaccaaaaagaCATATGTGGTTTACAATCCTTCACTTGTTTAATTACCTTGTCAGAATCCCTGCCAGCAGGTGAATTATTAACCCCAGCCTTCCCAAGGCCGTGTTGAGTTACAGGCCACGCTTTCTTCTGTAGCCGTGAAGCAAAGCAGTAAACATCCCTCTGTATTTCCTGGTTTGGAGTCCAGGGCCAGCTGCACTGCCTGACCGCTGGCTTCTCCTCCTGGGTGCTGAACTGGTCTGGTCTGGGCACAAGTTCAAGGCCTATTTCACAAAGAAAAGAGCAGATCATCTGTCCGCTTTTCAATTAGCACTTTCACAGCACTGGCGCTCAGGAActgtattaaagtattaaagaGACTTGGCCGGAGAGGACTTTACCGACCGGTTTAAAGACAAGTTTCAAGCACTTATGAGCTGAAGCGTAGGGAACTCTTTACATCATAGAGGGCCAATCAGGGTTATGCATGGGCCCCCCAGGGGTAGAGAACACTTTATTGCTTTCCCCCTCCCTTTTAAAGCCACTAGCAttattctgtttctttaaaaaggCAACAGACTATGAGACTAGTAGATTGATGAATACCCAAAGAGCACATTGttgtttaatttctctctctctctctcatctacTGTTCTCTATTGACACCACCCACCCCTGCGCCACCCCTGAGTTTCAGAATCGCCGGGTGCAATTCAGGTCTTTTGGTCTGAGACCACTTCCTCTATAAGGTTACAAAAACTTAGCCAACCCGAATATAACGGAGAGTGGCGTTCAGTGGGTCGCGTGCAGTGGGTCGCTTTTTCTACTGGTTTCTCTTTCTGAGTTTTCTTTTGTCTGAAGGCGTCCCCCACACGTGAAATCATGCGGAGTCTGAGAGAGCAGTTTCAAGGCGTCTTTCTCTCATTCGATTGTCTTGGTCCTTATTGTCCTTATTGTTTTTATGgacaaactaaaaactaaaacataacaaatactGTCCCAAAGAGTTTGAAGAGTTCCCTTGTCTCTCTTGATCCAACTTGTAATGCAAATACTTTGTTCCTTCACTAAAAGTAGCCTTGGAAATTGTCCTTCAAGAAAAGCAATACAGATGTACGATtagtagtgtttattttattagctaGGAATAAGAGGTCAGACGTTTGGTTTTAACACTTTATACACACGGTATGTCACACATTTCTGAAGATCTGAAATGTTTCAAAAAGCCCAGTGTGGCGATGTTGTAAATAGGGTGTAGATTAatacaaagaaatatatttgtaagtACTGTTAataccttttttatatatatattttgtatgaaaacTGAAATTTTGAAAAAAGCgctttctgtttttgaatgatttttattttgtttgatcagttattatatatatatatatatatatatatatatacataacttAAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008499 True 3605 mRNA 0.51 2 2787868 2793880

Neighbor

gene id symbol gene type direction distance location
AMCG00008493 NA coding upstream 67207 2715820 ~ 2720661 (+)
AMCG00008489 elavl3,LOC102780136 coding upstream 157669 2616463 ~ 2630199 (+)
AMCG00008487 NA coding upstream 271359 2515229 ~ 2516509 (+)
AMCG00008483 NA coding upstream 357087 2424395 ~ 2430781 (+)
AMCG00008485 NA coding upstream 365859 2420340 ~ 2422009 (+)
AMCG00008498 keap1 coding downstream 4660 2798540 ~ 2811299 (+)
AMCG00008497 NA coding downstream 21516 2815396 ~ 2823096 (+)
AMCG00008505 NA coding downstream 110679 2904559 ~ 2906941 (+)
AMCG00008509 NA coding downstream 201061 2994941 ~ 3003560 (+)
AMCG00008510 prdx2 coding downstream 222576 3016456 ~ 3019921 (+)
G49431 NA non-coding upstream 323201 2445185 ~ 2464667 (+)
G49341 NA non-coding upstream 574375 2212429 ~ 2213493 (+)
G49321 NA non-coding upstream 579391 2163319 ~ 2208477 (+)
G49294 NA non-coding upstream 877449 1908823 ~ 1910419 (+)
G49271 NA non-coding upstream 948864 1838186 ~ 1839004 (+)
G49541 NA non-coding downstream 18294 2812174 ~ 2812893 (+)
G49582 NA non-coding downstream 91951 2885831 ~ 2886138 (+)
G49598 NA non-coding downstream 115782 2909662 ~ 2910628 (+)
G49599 NA non-coding downstream 116814 2910694 ~ 2910939 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 234098 3027978 ~ 3042595 (+)
G49523 NA other upstream 17824 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 576354 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 644474 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 680076 2088480 ~ 2107792 (+)
AMCG00008473 NA other upstream 712219 2062556 ~ 2075649 (+)
G49583 smarca4,LOC102779508 other downstream 92886 2886766 ~ 2888896 (+)
AMCG00008526 NA other downstream 636017 3429897 ~ 3885604 (+)
G49980 NA other downstream 1362208 4156088 ~ 4160062 (+)
G49982 NA other downstream 1368178 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1768111 4561991 ~ 4572874 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026270 s1pr5a coding NC_007114.7 CM002887.2 19364948 ~ 19368435 (-)