AMCG00008500


Basic Information

Item Value
gene id AMCG00008500
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2832719 ~ 2835316 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008500
CTCTCACGAAGGTCTCATTATAGTTAAAACCCGCACCTGCTTTGCAGGGTCTTTAACCCGCCGCGGCCCGGCTGCTGCTGCGCATGTCCGCAACTTGAAAAGCCCGCCTTCCGCCGAGCGCTCCCATTGGCCGGCCTGGAGGCGTTACCACGGGGACGCGGTGGCAACCATACGTTAGCCCCGCCCCATTCTCCCTATTTGGCGCGCCACGCCCTCGCCGGCGGCTGTGATTGGCGGAGGAGGAGGGCCGGGGCGAGCGGAGCGGAGCCGCGTTTAACCCCTGGAGCCAGTCAGCGCAGCCCGGCGGAGAGAGCCTGTGAGCCGGCTTCGACACAGGACACTGCGCGGAGCCCGTCCGCTtgatttaaatactgtttacGGCGCTGAGCCCGTCCGCCtggtttaaatactgtttacTCCACcgcaacaacagcagcagcggaGCAACGGCTCTCGAGTCCGGGAGCGGGGAGGCGACTGACTCCGCCTGGCGCTGCTGCTCTGAAGCCGCCGCTCTGAGTTCCTGTGTGGGCCGCTTCTCTGCGCGTCTGGGCGCGGGTATGGACGCCGAGAGGGGCGCTTCTCTCTCGAACGGCGCGGGCAGCTAGCGGAACCAGAACCAGGACCGGACCCGCCGCAGCCGGGCGCCCAGGACCCGGTTTCCCCAGGCTTTGCCCCCTGTCGACGTCACGGGCCGGGCTCCGCACCGGCGAGAGGGATGGTCCTGGAGGAGAGAGACGCCGGGAGGAGGCTGACGGCGGCGGCGGCCCGAGGGGACCTGCCGGAGGTGCGGAGGCTGCTGGAGGGGCAGCGCGTCCACCCGGGCACCGTCAACGAGTTCGGCCGGACCGCGCTGCAGGTGATGATGATGGGCAACAGCGCGGTGGCTCGAGCTCTGCTGGAACACGGCGCGGATGCCAACGTGCAGGACGGCCTGGGCATCACCCCCGCGCACGACGCCGCCCGGACCGGCTTCGCCGACACGCTGCGGGTGCTGCTGGAGTTCGGCGCCACGGTCAATGTGCCCGACCAGTCCGGCGCGCTGCCCATCCACATCGCCGCCCGGGAGGGCCACGCCGACGTGGTGGAGCTGCTGGCGCCGCTGTCCAACCTCACCCACCTGGACACCAGCGGCCACACGGCCCTGGACATCGCCCGTGCCACCTCCTGCCCGGCCGTGCTGCGGCTGCTGGAGCGCCAGCTGGAGGTGGGCCTGAGCGTCCAGGCGTAGCCGCTGGGCCGGTTCCTGCAGGACTGGTTCTGTTGTCGTGTTGCTTGGCTTCCAGCCCCAGTTGAAAGaaaattgttcttgttttacagaagaaaaaaggtgCTTTTACATGTTGGATAACTTTTAAAAGTCCCAAAGATATCACTAAGTTTACACAGATATGCAGGTTTAAAGCATTTCTAATTTGTGTTCTTatgtcattaattatttttttaacctggaCAGGACTGTGGCTGTATGAATTTTACCCGAGGATGTCCTCACTTGCGTGTGTAGAGGCTGTTTGGTTGGGTTTCCTTCTTGTTTACGTGTTGTACAGAATGTGTTTCAATGAATTTATTgctattataatatttatacgAGATTAATCTATGAACTGTTGTGTGTTGAATATTTCACTGttgaaagatgtatttatttggaagtGGAAACATAGCTTTGTGATATTTAaagtctaaaataaaacaattgcataCACTTACACCCAAGTGTCCTGCCATCTGAACTCCCAACGTCTTCAATCTCTCTACAGCAGGGGTGTcggactccagtcctggggggccgcagtgcctgagctcccaattacttcaTTAATGTCATTACTTAGTCAGACGGGCTTATCCAAAACCTCCATATCTG

Function

GO: NA

KEGG:

id description
K06623 CDKN2D, P19, INK4D; cyclin-dependent kinase inhibitor 2D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008500 True 1870 mRNA 0.59 2 2832719 2835316

Neighbor

gene id symbol gene type direction distance location
AMCG00008501 NA coding downstream 547 2824461 ~ 2832172 (-)
AMCG00008503 NA coding downstream 18696 2811361 ~ 2814023 (-)
AMCG00008495 fdx1l coding downstream 98215 2731887 ~ 2734504 (-)
AMCG00008496 NA coding downstream 105595 2722474 ~ 2727124 (-)
AMCG00008494 NA coding downstream 122128 2709542 ~ 2710591 (-)
AMCG00008504 ap1m2 coding upstream 3779 2839095 ~ 2845891 (-)
AMCG00008502 NA coding upstream 19067 2854383 ~ 2872051 (-)
AMCG00008506 smarca4 coding upstream 51451 2886767 ~ 2903195 (-)
AMCG00008507 NA coding upstream 75661 2910977 ~ 2913789 (-)
AMCG00008508 LOC107751642,LOC105909359 coding upstream 87569 2922885 ~ 2950000 (-)
G49547 NA non-coding downstream 8743 2823241 ~ 2823976 (-)
G49462 NA non-coding downstream 395962 2377005 ~ 2436757 (-)
G49419 NA non-coding downstream 472607 2359860 ~ 2360112 (-)
G49414 NA non-coding downstream 595858 2236527 ~ 2236861 (-)
G49394 NA non-coding downstream 761847 2069790 ~ 2070872 (-)
G49606 NA non-coding upstream 74346 2909662 ~ 2910628 (-)
G49614 NA non-coding upstream 139633 2974949 ~ 2975153 (-)
G49802 NA non-coding upstream 538228 3373544 ~ 3379324 (-)
G49806 NA non-coding upstream 554887 3390203 ~ 3392090 (-)
G49811 NA non-coding upstream 578865 3414181 ~ 3443909 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 130297 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 747694 2073783 ~ 2085025 (-)
G49375 NA other downstream 951757 1879621 ~ 1880962 (-)
AMCG00008462 NA other downstream 973228 1798845 ~ 1859491 (-)
G49605 NA other upstream 71359 2906675 ~ 2908665 (-)
AMCG00008554 NA other upstream 595498 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other upstream 934368 3769684 ~ 3777354 (-)
AMCG00008602 NA other upstream 2751759 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 2820373 5655689 ~ 5786328 (-)

Expression


Co-expression Network