AMCG00008508 (LOC107751642,LOC105909359)


Basic Information

Item Value
gene id AMCG00008508
gene name LOC107751642,LOC105909359
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2922885 ~ 2950000 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008508
atgtcccGGAGCGGGGCTGGTACAGGCCTCTGTAGCGCTGACCCCGTTGTGGACGTCTACGGATCTCAAACGTCTTCACTGCGGCGGCGGGAAACTCCTGTTCAGCTGCGGTCACATCCCAAAGAAGATGAATGCCTTCTCTCCATCCGGGGGGCTGTTGTGTCATCTCCACCGCGTCGCATTGCTCCCTTTTGTCGCACCAGTAACCGGAAGAGCCTCATCCTGACGAGCACCTCCCCCACCCTGCCCCGCCCACACTCCCCGCTGCCGGGACACATCGGAAGCAGCCCCCTGGACAGCCCCCGGAACTTCTCCCCCAGCACCCCGGCCCACTTCTCCTTCGCCTCGTCCAGGAGCCACGGGCACCGAACTGACAGGGCGGACGGGCGGCGCTGGTCTCTGGCCTCCCTGCCTTCGTCGGGATATGGGACCAATACACCAAGCTCAACGTCCTCCAGTTCCTCCCAGGAGCGGCTCCACCAGCTGCCCTTCCAGCCCACCATGGACGAGCTGCACTTCCTGTCCAAGCACTTCGGCAGCACCGAGAGCATCACCGACGACGATGGGGGGCGGAGGTCACCGGCGGTGCGGCCACGCTCTCGGAGCCTCAGCCCGGGACGCTCGCCCTCCTGCTATGACAACGAGATCGTCATGATGAACCATGTCTACAAGGAGCGCTTCCCCAAGAGCGTGCTACCGCTGGCCGACGGAGTCCTGAGCTTCATCCACCACCAGATCGCAGAGCTGGCCCGAGACTGCCTGGCCAAGTCCCAGGAGGGCGTCATCACCACCGTCTACTTCTTCGAGCTACAGGAGAACCTGGAGAAGCTCCTGCAAGACGCGTTCGAACGCTCCGAGAGCTCAGAGGTGGCCTTCGTCACACAGCTGGTCAAGAAGCTGCTCATCATCATCTCGCGGCCGGCTCGGCTCCTGGAGTGTCTGGAGTTCAACCCTGAGGAGTTCTACCACTTGCTAGAGGCGGCAGAGGACCACGCCAAAGAGGGACATCTAATGAAGACGGACATCCCCCGATACATCATCAACCAGCTGGGCCTGACCAGAGACCCCCtggaaggtgagagagagagcggtggGCACAGAGGCAAGATGAGGGCCAAGAAACCGCCCATGGAGACCGACTTCCAGACCATCAAACTCATCAGCAACGGGGCGTACGGCTTGCTGATCACATCCATGGGCCACATCAAGCTGACGGACTTCGGCCTGTCCAAGATGGGCCTGATGAGTCTCACCACCAACCTGTACGAGGGGCACATCGAGAAGGACGCGCGCGAGTTCCTGGACAAACAGCCGGTGGACTGGTGGGCCATGGGTATCATCCTGTACGAGTTCCTGGTCGGCTGCGTGCCGTTCTTCGGAGACACGCCGGAGGAGCTGTTTGGACAAGTCATCAGCGGCGGCGCCTACGAGGTGAAGCAGCACTCGTTCTTCAGGGAGCTGGACTGGAACAGCCTGCTGAGGCAGAAGGCCGAGTTCATCCCCCACCTGGAGTCGGAGGAGGACACCAGCTACTTCGACAGTGACGCGCTCAGAGAGGTATCATCATATCAACTCGTCTATAGCAGCATGGAGCACCTCTCCCAGCTGGAGCAGAAGCCCACCGTCACCAAGAGGGACCCCAAAAACCACAAAGAGGACAAGCTTCGGCCTGCGGGACAAGAGCTGGAGGACGAGTTCCCCAGAGATGAGGGTGACACCGATCCGCCACACAAGCAGCCCCAGAGCCGGCCGGCCACCACTCCCACTGGCCTGGGGGAGCACAAGCTGCCCGGCAACGGGACCCCCACTGCGGCCACCGCCAGCGACATACCCGCCCGGGCTGGCGAagcaggggctgctgggaaggAAGTCGGCACAGACCCCTCGGCCTCGCCCTGCGCCACCAACGACCTGGTCTTGCGGCGGGCGCGGCACCAGCAGCTGTCGGGCGACTCGGCGGAGAAACGCAGCTCGCGGCCTGGGAACAAGGTCATCAAGTCGGCCTCGGCCACCGCGCTGTCGGTCATCATCCCCACAGTGGAGCAGCACGGAGGGTCCCCCCTGGCCAGCCCCATGTCCCCCCGCTCCCTGTCCTCCAACCCCTCGTCCCGAGACTCCTCCCCCAGCCGGGACTACTCACCCGCCGTCACCAGCCTGCGCTCGCCCATCACCATCCACCGCTCAGGCAAGAAGTACGGCTTCACACTGCGCGCCATCCGCGTCTACATGGGCGACAGTGACGTCTACAGCGTGCACCACATCGTCTGGCACGTCGAGGAGGGAGGCCCCGCCCAGGAGGCTGGGCTCTGCGCCGGTGACCTCATCACTCACGTCAACGGGGAGCCGGTCCACGGACTGGTCCACACAGAGGTGGTGGAGCTCATCCTGAAGagcgGCAACAAGGTGACGGTCACCACCACGCCCTTCGAGAACACCTCCATCAAGATCGGGCCGGCCCGCAAGTCCAGCTACAAGTCCAAGATGGCCCGCCGCAACAAGAAGACGGTGGCCAAGGAGGGACAGGAGAGCACCAAGAAGCGCAGCTCGCTGTTCCGCAAGATCACCAAGCAGTCCAACCTGCTGCACACCAGCCGCAGCCTGTCCTCACTCAACCGCTCACTCTCGTCCAGCGACAGCCTCCCCGGCTCCCCCACGCACAGCCTGTCCGCCCGCTCGCCCACACAGAGCTACCGCTCCACCCCGGACTCCACCTACCTCGGCGCCTCGTCTCAGAGCAGCTCCCCGGCCTCCAGCACACCTAACTCCCCAGCCACCTCCCACCACATGCGGCCCAGCAGTCTGCACGGCCTGTCCCCGAAGCTGCACCGGCAGTACCGCTCAGCCCGCTGCAAGTCCGCCGGCAACATCCCACTGTCCCCACTGGCCCACACGCCCTCGCCCACCCAGTCCTCCCCGCCGCCGCTGCCCGGGCACACGGTGGGCAGCTCCAACACCACGCAGACCTTCCCCGCCAAGCTGCACTCCTCGCCGCCTGTGGTGCGCCCACGGCCCAAGAGCGCCGAGCCACCGCGCTCCCCGCTGCTCAAGAGGGTGCAGTCGGCCGAGAAGCTGGGATCGCCGCTCTCCTCCTCCGACAAGAAGGTGGTGATGCGCAAGCACAGCCTGGAGGTGTCCCACTCGGAGTACCGCAAGGAGTCCTTCCACAGCGAGCTTGGCCTGCAGAGCCTGATGGAGACCGAGGGCGAGAATGTGCCCCAACCGCCACCACCGCCACCGCCGCCCACCTGTGAGACGGGCTCTCTGAAACCCGTGAGGAAGCTGGGCCGGCAGGAGTCACCGCTGAGCAGGGATGCCCTCTTCGGCAGCAGGGAGAAGACGGAGGGGGTCAAGGAGGTGTCGGGGAAGTTGCCCACTACGGAAGCAGCCTCCACTTCTCAGGAGAGCCGGAAATCACCCGGCAGCGAGGCCCCACAGGCTGGCAAGGGCAAACCGGCAGTCGCCCAGGCGAGTTCTGTCCCAGCCGCCCAGTCTCCGGTGCAGAAACCCCCCTCCCCCGTCGCCAAAGCCACGGAGTTGAGGTTGCCCACGGTGGGGACGGCGAGCGTGGGCTGCGGCCCCAAGACCCCGGAGAAGGCCTCGTCCCTGGAAGACAGCAAGGGCCTGGCTGAGAGGAAGCATCAGGGCGTGCAGACAGAGGCCACCTTCACGGGGGCCAGGAGCCTGGAGAAGGACGCCCGCCGAGAGCAAGAGGCTGCCAGATCACCCCCGAAGGGCAGCCCCCAGGGGGACATGGCAGGGAGGGTCGGCCCGAGCCAGGATAGGAAGACCTCTGTTACCGGGGCTGTGGAGGCAACCAAAGCTGGCAAAGCCCCGGAGAAAGAGGAGGCGCCTCGGAAAGCTGTTGCCGCCAATGGGAGAACTCCGGAGCCCGCGCCAAAAACTCTGCCCGGGGCTGCCGACCAGGCCCCTGTCCCGGCCAAGGATAGTGTCTCTGCTGGGCCGCACTGCTCCAAAGGCACTCAGGGCAAAGAGGAGAAATGGTTGCTGGAAGTGGTGGAGGAACACACCACCACCATCTCCTCTCCCAGCAAATCCAGGCCCGTCTCACCCGGCGACAAGTCCAGTTTCGTCTCTCAGTTGACCAGCGTGGCGAAAACTGTCCTGGGGCCGATGAAAATGGGCTCCTCTGGCGGGGCGGAAGGACTCAAGAGCAAGGAGAGCCCCAAGGCTGTGGAGGAGAGACGGGGGAGCTCGGCAGGAAAGCCTGAGGCTCCATCTGGGAGTAGGCCGGTTGCCTTAGCTGCGCAGCCGGGCCTAGTCAGTCCCGCGCAGCCGGATAAGACCGAGAGCTCCCCTAAATATCATTAA

Function

NR:

description
PREDICTED: microtubule-associated serine/threonine-protein kinase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008508 True 4329 mRNA 0.65 25 2922885 2950000

Neighbor

gene id symbol gene type direction distance location
AMCG00008507 NA coding downstream 9096 2910977 ~ 2913789 (-)
AMCG00008506 smarca4 coding downstream 19690 2886767 ~ 2903195 (-)
AMCG00008502 NA coding downstream 50834 2854383 ~ 2872051 (-)
AMCG00008504 ap1m2 coding downstream 76994 2839095 ~ 2845891 (-)
AMCG00008500 NA coding downstream 87569 2832719 ~ 2835316 (-)
AMCG00008512 NA coding upstream 61857 3011857 ~ 3014067 (-)
AMCG00008513 NA coding upstream 71743 3021743 ~ 3023525 (-)
AMCG00008511 LOC103364966 coding upstream 78669 3028669 ~ 3029688 (-)
AMCG00008519 best2,LOC103354508,LOC106931010,LOC100695332 coding upstream 154606 3104606 ~ 3111684 (-)
AMCG00008520 asna1,LOC107569530 coding upstream 166825 3116825 ~ 3121999 (-)
G49606 NA non-coding downstream 12257 2909662 ~ 2910628 (-)
G49547 NA non-coding downstream 98909 2823241 ~ 2823976 (-)
G49462 NA non-coding downstream 486128 2377005 ~ 2436757 (-)
G49419 NA non-coding downstream 562773 2359860 ~ 2360112 (-)
G49414 NA non-coding downstream 686024 2236527 ~ 2236861 (-)
G49614 NA non-coding upstream 24949 2974949 ~ 2975153 (-)
G49802 NA non-coding upstream 423544 3373544 ~ 3379324 (-)
G49806 NA non-coding upstream 440203 3390203 ~ 3392090 (-)
G49811 NA non-coding upstream 464181 3414181 ~ 3443909 (-)
G49810 NA non-coding upstream 475782 3425782 ~ 3437347 (-)
G49605 NA other downstream 14220 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 220463 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 837860 2073783 ~ 2085025 (-)
G49375 NA other downstream 1041923 1879621 ~ 1880962 (-)
AMCG00008466 NA other downstream 1082786 1819774 ~ 1840099 (-)
AMCG00008554 NA other upstream 480814 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other upstream 819684 3769684 ~ 3777354 (-)
AMCG00008602 NA other upstream 2637075 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 2705689 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 2798890 5748890 ~ 5885450 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000648 mast1a coding NC_007112.7 CM002885.2 51312752 ~ 51377850 (+)
grasscarp (Ctenopharyngodon idella) CI01000172_00103244_00121064 MAST1B coding CI01000172 null 103125 ~ 121064 (-)