AMCG00008509


Basic Information

Item Value
gene id AMCG00008509
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2994941 ~ 3003560 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008509
GAGCCGAAGAGCAGGAGGATCTCTGTAGAAGACGCAGCCACTGGGTTCGCCTGCCCGTCTCTCTCGCAGCATCGCAGCAAAGCGGCCGGACAGGAGACTCGCACACACGGGCATCTCAGAACAGGTTGACGCAGGTGAAAAGATGAGTGCCAAAACGTGGCTGTCACTGGTAGCGGTGTCCTTCTCCATGCTGATTGGTTTGGCTTGGTGCCAAGATGGGGCGTGTCTCCAAGGTGGGAAACACAAAGCCACGCCCAGTCCGGAGCCATACCTGCAGGAGTGCACCCTCTACTCCGACAACGCCTGCTGTTCGGAGCAGGAGGCCCAGGAGATCGCCGCCACGCCCGCCTCCCGGGTCGATGATATCTACTGGGACAGGTGTGGCCCCCTCAGCGCCAGCTGCGAGGGGTTCCTGAAACGAGTGGCTTGTTTCTACCAATGCTCCCCAGACGCTGCCCGCTGGCCTCACCCTCACCGGCCGGCCGCCCTGCAGGGGGTGCCTCTGTGCCAGAGCTTCTGCCAGGACTGGTTCGAGGCCTGTAGGGAGGACCTGACCTGCGCACGCAACTGGGTGAGCGACTGGGAATGGAGTCCCCAGGGAAACAACTGCACTGGAAAGTGTGTGCCCTACCAGCAGatgTACAAGGACGGCAGGGAGCTGTGTGAATCGATGTGGGAAGACTCCTTCCGCATGGTGGAGGAGGGCGAGCCAACAGAGGAGGCGTCCTGCGGCTGCCTGACCCTCAGCCCCTCTGACCAGGAGGTGGTGGGGGCTCTGCGGGCCCAAGAGGGCAACCCCGACGAGCTGGACACCACCAAGAGCGGGGTGCCCCTGTACCCCGCACCCTGCCGCCGCCCCGTGCGGCCCCCGCAGGCCCGGGGGAGCAAGCGCAACACCCTGCTGCACAAGAGATCCATCTTCGTGGAAGACGTGGAGGGCAGCGGCAGCGGCTTCTAGGGATGTTCCAGGACCGGTCCGGAGTCTCCCCTGCACCTGCCCTGCCTGTACCCCCGCCCCCCAtcccctcctctccctgttGCCCACGCCCTCGGCTTCTGAAGAAACGCCACCTGTTTTGAAGAGCTGGTTGACTAGGGGATCTGTGTGGCATGATCTCATTGTGCGCCTCGTAAAGTAAGCAACCCAAAACTGCTTGCATAAAACACCTTGTGTACTATTTAATGCcacaaatatatgcatacacatcTATTTATAATGCTCACAGGTACATGTCTTGTTTAGTTACACCCTCAAAAAGAAGCAGCACTTTAACTTGAGGTGTTTTGTGCAACCAGGCTTCTCGGCAGCAGCGGTTACTCTGTGAGGATGACGGACCAGTAAAGCCACATGGGCAACCGTAGAATTACTGGACCATTTCAGCCGATATAAGAAGCTGCTAGTGACGCAACAAGGACACCAGAAGGAAGGTTTTGCGTTGGGGGTATTGACAAGGGCATGGTCTCCAGGGGGCTCCCCAAGCTCAGGCACCCACAACATGTCCCACCCCGAGCCAGTCACCTGACCTCCTTGCGCTCCGTCCTTCAGACAAGGCGAGGCAGACCGAAGTCCCGCTGTCAGTGCCCAGGCCGCAGTCGCTGCTGGTGATGTCATAGCTCACCCTCCAAGTCTCCGAGTCTTTCCCAATTccagtgtctgctaaatgacttcGGGTACAGCTCTGCCAGTTTAGGTTCAGCCTTGGCACACCCCTCCCACCCTTCTTGCTAGCTCTGTAATGCACGTGTACTCGTCTACATTTCATAGGGGGAAAACGGCAGTTCCAGGGAGGGAAGCGGCTCCGGGGACATTCCCGTTCATTGTCCCGGTGATGAGAAGTAAGAGCAAAACTTGGATGCAGAGGCGTCGATAAATCCACATCCCTCAGCATAGTAGCTCTcgtgtttctttaaaaacaaaactacatatATATCTCTCATGTATTCTCTCATGTCTGTTATCCTGCCACAACGCTACTTCCTTGTGGACGAATGCTTGGTGATTTGgctttttttgtgtctgttaCTGTTAACACACTTCACTTAGATCGCCCTGTGAAGGACATGCGTGTGAAGACTTGAATGCCATTGCAGATTCATACCGGCTCTTAGACAAAGAAGCACAAGAAAAGTCAACCCTGAAAACGACAAGCTTTTGCACAATTTTCTTTTAActctgaataaaaaacagaactaCACTCGGCCTCAGGTGTCCAGAAAATCttttaaaccattaaacaaATGATCACTTAAGGCATCTagaagcattatatatatatatatatatatatatcagtataaAACACGCCTCGGGTCATTTTTCAAGCTATAGCATAGACTGTCAAGCAGGTTTAGTAGTAAAGTCAATCTGTATTTAAAACCCCGCAACAACCTTAGAACACATGAAGACAAATCGACAGCCAACACGTGTCCCGTTGCACACGTCTGAAAGCTCGTGTGTCGGACCGCTTCAGCTGTTGTGTGGTCGATGTGTGTCACCTTCACTTCAAAGTGTACTGTATTGCGTTTCTTTTCTGAGCGCTGAATAAAGATTGGGTTTTAATTGTC

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008509 True 2565 mRNA 0.54 6 2994941 3003560

Neighbor

gene id symbol gene type direction distance location
AMCG00008505 NA coding upstream 88000 2904559 ~ 2906941 (+)
AMCG00008497 NA coding upstream 171845 2815396 ~ 2823096 (+)
AMCG00008498 keap1 coding upstream 183642 2798540 ~ 2811299 (+)
AMCG00008499 NA coding upstream 201061 2787868 ~ 2793880 (+)
AMCG00008493 NA coding upstream 274280 2715820 ~ 2720661 (+)
AMCG00008510 prdx2 coding downstream 12896 3016456 ~ 3019921 (+)
AMCG00008514 NA coding downstream 17035 3020595 ~ 3021066 (+)
AMCG00008516 LOC106601330 coding downstream 83620 3087180 ~ 3102783 (+)
AMCG00008515 NA coding downstream 115549 3119109 ~ 3124136 (+)
AMCG00008517 NA coding downstream 128320 3131880 ~ 3137332 (+)
G49599 NA non-coding upstream 84002 2910694 ~ 2910939 (+)
G49598 NA non-coding upstream 84313 2909662 ~ 2910628 (+)
G49582 NA non-coding upstream 108803 2885831 ~ 2886138 (+)
G49541 NA non-coding upstream 182048 2812174 ~ 2812893 (+)
G49431 NA non-coding upstream 530274 2445185 ~ 2464667 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding downstream 24418 3027978 ~ 3042595 (+)
G49738 NA non-coding downstream 353139 3356699 ~ 3359529 (+)
G49754 NA non-coding downstream 410621 3414181 ~ 3443897 (+)
G49753 NA non-coding downstream 440442 3444002 ~ 3445127 (+)
G49914 NA non-coding downstream 959568 3963128 ~ 3964014 (+)
G49583 smarca4,LOC102779508 other upstream 106045 2886766 ~ 2888896 (+)
G49523 NA other upstream 224897 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 783427 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 851547 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 887149 2088480 ~ 2107792 (+)
AMCG00008526 NA other downstream 426337 3429897 ~ 3885604 (+)
G49980 NA other downstream 1152528 4156088 ~ 4160062 (+)
G49982 NA other downstream 1158498 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1558431 4561991 ~ 4572874 (+)
G50215 NA other downstream 2592463 5596023 ~ 5596799 (+)

Expression


Co-expression Network