AMCG00008516 (LOC106601330)


Basic Information

Item Value
gene id AMCG00008516
gene name LOC106601330
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3087180 ~ 3102783 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008516
CTAATCCGCTGCTGCGCTAAAAGCCCAAGTACGGAAGCCCGCTTAGACGGTTGGTGCAGCGGCAGGAGAAAAGGCGAGCGCGGAATTGTGCCAGAAAGGGGGCCCGACCATTCCCGTGTGCACAGCGGCTCAGAAACAACTCCAGCCCCGAGTGAGACGCGCTGTTCCGGCAGACAAACCGCAATGAGTTTGAATAAAGCGGATCTGTGTGACTCATTGCTGAACTGGCTGCAGACGTTCCAGGTGCCCTCCTGCGCCAGCAAGCAGGCCCTGACCAGCGGAGTGGCCATCGCACACGTGCTGCACAGAATAGACTCCTCCTGGTTCAATGAGACATGGTTGGGCCGAATTAAAGAGGACAGTGACGCAAACTGGAGGCTGAAGGTGCTGGGTCACCAGGTCTCGGACGACCACTTGCCCGATGTGAGCCGCATCGGGGAGGTGAACGATGTCGCCGAACTGGGCAAGCTGGTGCAGCTGGTGCTGGGCTGCGCTGTCAGCTGTGAGAAGAAGCAGGAACACATCCAGCAGATCATGACGTTGGAGGAATCGGTGCAGCACGTGGTGATGACAGCCATCCAGGAGCTGCTGACGAAGGACGCTGTGGACGCGGGAAGCCCTGAAACGTATGGAGACTTTGACAATCAGTCCCGCAAGTATTACTTCCTCAGTGAAGAGATGGAGGAGAAGGACGACCTGAGCCAGCGCTGTCAGGACCTGGAGCAGCAGGTGTCGCTCATCCTGGAGGAGAAGAACGCCCTGCTGGTGGAGACGTGCTCTCTGAAGGAGCGCCTGAGCCGCGCCGACCCCCTGGATGCATCGGCCGGCATCACCGGCaagaagctgctgctgctgcagacgCAACtggagcagctgcaggaggagaACTTCAGGCTGGAGAACGCCAAGGATGACCTGCGGATCCGTGCCGAGCTGCTGGAGAGGGAGGTGTCCGAGCTGCAGCACCGCAACGAGGACCTGACCAGCCTGGCGGAGGAGGCGCAGGCCCTCAAGGATGAGATGGACATCCTGCGgcACTCCTCTGACAGGGTGAGCCGGCTGGAGGCCATGGTGGAGACCTACAAGAAGAAGCTGGAGGACCTGGGCGACCTGCGCAGACAGGTGCGCTTGCTGGAGGAGCGCAACACGGTGTACATGCAGCGCACCTgcgagctggaggaggagctgcgCAAGGCCAACGCGGTGCGCACCCAGCTGGACACCTACAAGAGACAGGTTCACGAGCTCCACGCCAAACACTCCTCGGAGGCGGTGAAGGCGGAGAAGTGGCAGTTCGAGTACAAGAACCTGCATGACAAGTTCGAGGCCCTGCTCAAGGAGAAGGAGCGCCTGATCTCGGAGAGGGACACCTTGCGCGAGACCAATGACGAGCTGAGGTGCATGCAGGTGCAGCAGAACTACCTGAGCCAAGACTCCCTGTGTGAGGAGGACGCTGGCGCCGTGGGGAACCTGGCGGCTGAGATCATGCCCACGGAGTTCAGAGAGACGATCGTGCGTCTGCAGAACGAGAACAAGATGCTGTGCGTTCAGGAGGAGAGCTACCGGCAGAGGCTGGGGGAGACGCAGGGCCAGCTGGAGGAGTCCCAGCGCAGCCAGAACCGCCTGGAGACTGAGAACAGgctgcagcagcagcagatctCAGAGCTGCGCACCCAGGTGGAGGAGCTGCAGAGAGCCCTGCAGGAGCAAGGCACCAAGACCGAGGACTCGTCTCTGTTGAAGAAGAAGCTGGAGGAACACCTGGAGAAGCTGCACGAAGCTCACTCGGAcctgcagaagaagaaggagttCATTGATGACCTGGAGCCCAGAGTGGATGGCAACATGGCGAAGAAGATCGATGAGCTGCAGGAGATCCTGAGGAAGAAGGATGAGGACATGAAGGCCATGGAGCAGCGCTACAAGAGATACGTGGAGAAGGCCAGAACGGTGATCAAGACCCTGGACCCCAAGCAGCAGCAGCCGTCCGGCCTGTCCCCGGAGGTGCAGGCCTTGAAGAACCAGCTGAGCGAGAAGGAGCGCAAGATCCAGCACCTGGAGAACGACTACGAGAAGTCCAAGTCCCGGCACGACCAGGAGGAGAAGCTCATCATCAGCGCCTGGTACAACATGGGCATGGCTCTCCACCAGAAGGTGACGTCGGAGAGGAccagtgggggtggggtggccCAGTCCTTCCTGGCCCAGCAGAGACAGTCCACCAATGCCAGGAGGGGCCTCTCCCCGCGCCTGCAGCCCAGATAAGGGCAGCTATGCTGGGTCCCCCCGCCACGGCGTTCAGACGGCTGTGGCTCCTCACCGGCCCCTCGGAGCAGTGCTGCCCCTCAGGCACTGGAATGGCGTggattagacacacacacacacacacacacacacactctgtggGGTCTGGAGGGCGGCCCCCTGATTTGTCAAGCTGCTGCACAAAGCACACCGGCCTCTCTGGCCACAAAGACCGACTGTAGCGACTGTTCCTGAGGACTAGAAGCTTCTGTCTATATTGATcgttctcttttgtttttttggtcccCCCCCCAGTTTATactttctctcctccctcctcctcgCTGGTCACAGGCCGTGGAGCGGTTCTTCCGAGTACTGCACCGGTCGCCTATTGTTGCTGCTGTAGAGAGACGGAAGATCTGTATTCGATTGGCCCTCCACTCTGCTGCGGGGCCCTCGTGACGCGTTGTCTTCCCTCCTGCATCCCGTCATGTAAGAGACCGTGCTGTCTACACGGGATAACCGGAGGGTCGTATTCTGCTCCCTGAAAGATCGGTTTGAAGGAGGACACCTGGTCTTGAAAGCGACCTGTTGGCCCGTCCATGGGACGGGGGGGACCGTacttagtatttttatttggagaaaaaaaaagtttcaagaTCTTGTCCTTCTTCGGCACTTCTTGGGaagtgcatgtttttattttagttctttTTATGATTAGATtgctttacttttaaataatgtaaggCCATTTTTAATCCCCCCCCCTCATTTTAAGGTAGCATTTACTAGAACAAATCATCATGTAAGGGTTTAAAGTTTTCTCCCGACTTATGTTTTTAAGTGTCTGTACCTTGGAGAGAATAGAGTATAATTGTCGAACACTACAAGTTTACAAATCGGCAGAATATAGAAGATTTCCTGATTGTTTGgttattttcaatgtgtttttatttttaaatgtattttaactacCTACTCTTGTACATTGTAGACACGCGCTTAAGCACTTTTCTTTTctacaggttaaaaaaaaaatgtatatattggtaATGCCTCCAAGCTACAGTGCCTCTCTGCACAGATTGAGTCTGTGATCATTCCCCCGAGGGGGTGAAATTGACGCGTCGAGCGCCCCAGGCCACTCAGTTGGTCTGTTTGGACCGCCTGTGAAGGAATGAAACGGGCCGACTTCGCTACACGACCGCGCCGCCACTTCCGGAGGTGGCAGGAGTCGATGTATTAAGAGACTGCGGTACGATTTGCTCATAATCAAATTCAATTATAATCCGCGATGAGTAACTCTTCGATTTGCCTGTCCGGCTGAGAACCCGCTCTGACACGCTGTCCGGCGGTGGGGCGTGTTTGTGGGTGAAAAAGCTCATTGGAGTCTGAATCATCATGATGCGTCGCACAGAGACGTTCCTGACGGATGTGCTGGCGTTTCTCGTGCTGTGATGCAGTGAGTTGTATTAACGGTACTATATTTATATGCCCTGTGTgcatctgtaaaaaataataatgatatctGGTTGACATGCTTGTAACCGTGCTGCTACAGTCTGCACCTGTGAAGTTCAGTGTCCAGGGGCGATTTAAAGAGATGAAAACTTATTTTAACCTCTTGAAAGGAAGTGATGGAAGAGAACAGCTGACGCGTGTCTAAAACACTGGACAACACAACGCCTCTTTGACACctcttaatgtattttatgaccACTGCTGAGATGGGAGGGTGATCCGTTTAGAGAAATGAATGCTGCCAGAGATCCCCATTTGCTGTTCCAGTCTTATCAGGGTGCGGGCGTCAGTCGGACGTGTTTCGGTACGTGTGTGGGATTGGAAACCGAATCGTTGTGGGATGCTGTGTGATTCCCAGTCCTAATGATCTGTCCTTGCTGAGCCAAGCTTTCTGTCCGGTGACTCCGTATCTcgtctgattttattttatttgaggttTTGTTTACCTGTCACATTGCCCAGGCCTTCTCCAGTGTCAGAAGTTGATTGGCCCCTGGTCTGATTGTCTAAACCTGTTTACAGCTGCTTGATCATCCCGTTCTCCTTAGGGCTGCGTTAAGCCTCTTTAGTTTGTACACTACAGCACATGCTACACTACAAGCTTGAAGCCCAGGgttgtttaaatgtgtgtattttattatctgaCAGACCTGGGGCAGATTCACAAAGCACAGGGGTGACGTGTAGATTTTTATCGTTGTTTTAGAGGTTTCCATTTTTCGGTGGgttttttttgtacatatttaattgGGTTGGTGGGGAATGTGGGAGTGGAGGCTTACCAGCTACTGTAGGATGAAAAAGAAGTCCATCTGTAATCTTTTGCACT

Function

NR:

description
PREDICTED: protein Hook homolog 2-like isoform X4

GO: NA

KEGG:

id description
K16611 HOOK2; protein HOOK2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008516 True 4600 mRNA 0.54 21 3087180 3102783

Neighbor

gene id symbol gene type direction distance location
AMCG00008514 NA coding upstream 66114 3020595 ~ 3021066 (+)
AMCG00008510 prdx2 coding upstream 67259 3016456 ~ 3019921 (+)
AMCG00008509 NA coding upstream 83620 2994941 ~ 3003560 (+)
AMCG00008505 NA coding upstream 180239 2904559 ~ 2906941 (+)
AMCG00008497 NA coding upstream 264084 2815396 ~ 2823096 (+)
AMCG00008515 NA coding downstream 16326 3119109 ~ 3124136 (+)
AMCG00008517 NA coding downstream 29097 3131880 ~ 3137332 (+)
AMCG00008523 NA coding downstream 250322 3353105 ~ 3355395 (+)
AMCG00008525 NA coding downstream 314728 3417511 ~ 3426260 (+)
AMCG00008527 NA coding downstream 359620 3462403 ~ 3469127 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 44585 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 176241 2910694 ~ 2910939 (+)
G49598 NA non-coding upstream 176552 2909662 ~ 2910628 (+)
G49582 NA non-coding upstream 201042 2885831 ~ 2886138 (+)
G49541 NA non-coding upstream 274287 2812174 ~ 2812893 (+)
G49738 NA non-coding downstream 253916 3356699 ~ 3359529 (+)
G49754 NA non-coding downstream 311398 3414181 ~ 3443897 (+)
G49753 NA non-coding downstream 341219 3444002 ~ 3445127 (+)
G49914 NA non-coding downstream 860345 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 922318 4025101 ~ 4026246 (+)
G49583 smarca4,LOC102779508 other upstream 198284 2886766 ~ 2888896 (+)
G49523 NA other upstream 317136 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 875666 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 943786 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 979388 2088480 ~ 2107792 (+)
AMCG00008526 NA other downstream 327114 3429897 ~ 3885604 (+)
G49980 NA other downstream 1053305 4156088 ~ 4160062 (+)
G49982 NA other downstream 1059275 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1459208 4561991 ~ 4572874 (+)
G50215 NA other downstream 2493240 5596023 ~ 5596799 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000236_00055079_00065468 HOOK2 coding CI01000236 null 55079 ~ 65468 (+)