AMCG00008523


Basic Information

Item Value
gene id AMCG00008523
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3353105 ~ 3355395 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008523
TGAAAATGGTCAATGGAATTATAGTCTGTTTTATGGAAGGCGAAAACTACAAACTAACAGGGTGGAAGATgacttcaaaaataattaaatcatagtTTGAGTATTTTATCATTTGATGGCTTATAGTTCTTGTGGAAGTTTGTACTTTGTACTGGGGACATGGTAAAATGGAACACATGTACCAAAATAAAGGCAGCTGACTGGCCGCCTATCGCAGAAGTTCTCTAGGACCCATCGCTGTCAGGTCAAGTGAGGCAACAAAGATGGCGGCCCCCGTGTTTGGCAGGAGGACGGCGCTGCTCTGCGGGGTGTTACGAGGGATTTCACCCCTAAATGCCCTGACACCCCGGTGCGTTTCCCTGCCGCAGGTCGCCTCCTATAACCCCAAGCCCCTGTGGCTCAATATTAAGGACCCTTACGTGCCCGACAAGGAGAGCGCCAAGACGCCGGAATGGCAGAAAACGGACAAGTACGACCGCAAGCTGTTCGGCCGCTACGGCTCGGCCTCGGGGGTCGATCCCGCCCGCCTGTGGCCCAGCGCCGGGAAGCTGGCCGAGATGGTGGCGGAGGAGAGAGAGTGGTTCCCGTCCCTGCAGGAGATGATCAGAAACACCGAGGCCAGAGAGAAGGAGCGCGCTAAGAGACTGCAGGCGAGAGAGAAACTGATCGCCGCAAACATGGCCAAGATGCCCAAGATGCTGGCGGACTGGCGCCGGGAGACCCGCACCCTGAGGGAGAAGCTCCGGGAGGACAAGGTCCGGCGGCAGCGGCTGCTGGCAGAGGCCCGGGAGCGCTTCGGCTACGCGCTCGACCCCCGCAGCCACAAGTTCCAGGAGATGTTGAAAGATAtcgaggaggaggagaagaaaaagaaaaagctaatgaaaaggagaaagaaagaggaggaCACGGGGCCAGTGGCGGCAGCACCAACAGCGGAGACCTCCACATCGGCGTGATTTTTAACTGTAATGCGAATTGTGACAGACTGGTGAATTAAAAACTGAGTCCAGAAACATGGCTTGTCCCATTTTGGAGGCACGCTGTTGTCAGCTCTTGATGTCTGCTTGTAGTAAAAGGAAGATGTTCGAGCTCAGTGAGAGGGACAACCAGTTGGCGTGCTTGTAAATTTCACAGAAGTCCATGTTCCACCTCACCCAAGCAACCGGTTAAAGATCCGCCTCAGAGGGACACGTGTAATGAAGACATTCTGCACAAGACCTGCAGTCACCTGTGATAATGCTGgttttaaaggagaaaatataaataaacgcTGACTTTTCTTTCTGTGTAACTTGCTGGTGTTATTGGTTTTCACTGTGTTTATTTAGGAGAGCATTCTGCAGAATGTCTAACCCAGGGGTttccaaaccggtcctgggggaccccctaccctgttggtttttgttccaa

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008523 True 1413 mRNA 0.52 3 3353105 3355395

Neighbor

gene id symbol gene type direction distance location
AMCG00008517 NA coding upstream 215773 3131880 ~ 3137332 (+)
AMCG00008515 NA coding upstream 228969 3119109 ~ 3124136 (+)
AMCG00008516 LOC106601330 coding upstream 250322 3087180 ~ 3102783 (+)
AMCG00008514 NA coding upstream 332039 3020595 ~ 3021066 (+)
AMCG00008510 prdx2 coding upstream 333184 3016456 ~ 3019921 (+)
AMCG00008525 NA coding downstream 62116 3417511 ~ 3426260 (+)
AMCG00008527 NA coding downstream 107008 3462403 ~ 3469127 (+)
AMCG00008529 NA coding downstream 212164 3567559 ~ 3581461 (+)
AMCG00008534 NA coding downstream 227726 3583121 ~ 3592683 (+)
AMCG00008533 LOC107553681 coding downstream 317306 3672701 ~ 3673436 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 310510 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 442166 2910694 ~ 2910939 (+)
G49598 NA non-coding upstream 442477 2909662 ~ 2910628 (+)
G49582 NA non-coding upstream 466967 2885831 ~ 2886138 (+)
G49541 NA non-coding upstream 540212 2812174 ~ 2812893 (+)
G49738 NA non-coding downstream 1304 3356699 ~ 3359529 (+)
G49754 NA non-coding downstream 58786 3414181 ~ 3443897 (+)
G49753 NA non-coding downstream 88607 3444002 ~ 3445127 (+)
G49914 NA non-coding downstream 607733 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 669706 4025101 ~ 4026246 (+)
G49583 smarca4,LOC102779508 other upstream 464209 2886766 ~ 2888896 (+)
G49523 NA other upstream 583061 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1141591 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1209711 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1245313 2088480 ~ 2107792 (+)
AMCG00008526 NA other downstream 74502 3429897 ~ 3885604 (+)
G49980 NA other downstream 800693 4156088 ~ 4160062 (+)
G49982 NA other downstream 806663 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1206596 4561991 ~ 4572874 (+)
G50215 NA other downstream 2240628 5596023 ~ 5596799 (+)

Expression


Co-expression Network