AMCG00008524


Basic Information

Item Value
gene id AMCG00008524
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3345535 ~ 3346773 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008524
ATGTTTCTTTGCGTTACCGCCCTGCTTTGCGCTCTTCTCTGCGCCACTGTGGACAGCTTTCCGCACAACGCGCTGGAGAGCGTCCTGGCCCGGCACAGAGCCGCCGAGGCGTCGGGCAGCGGGCCCGGCAGCGACGAGCCCGTCCGGGGGACCGTGAAGGTGGTCCAGGTCAGCCCACAGTTCCTCCAACAGTCGGGTTTTTTCCGTAGGGGGACACCGTTCAGGGTCCCCCCGCATCACAGAGGACTCTTGCCCCCATTCTTGGCGCTGGGGCGACCGGGACCTGCTGTCTCCAACTCCGGAGCTCTGCCCGGGCCACGGCCCCAGCTAGAGGGGAAGGGAGACACGGAGGCCATGAAGAGACAAGGGCTGGACATGTGGAGGAGAGCCATGGAGAAGAGCGGCGGTGCCAGGGAGGCGCTGCCCGTGCCCATTAGCCTGATGGACAGCAGCAAGCAGAGCTGCGCCGCGGTGCCCTTCACACAGCGCGTCTCGGCGCCAGGCTGCGACGCGGTCACGGTGTCCAACAGGCTGTGCGTCGGCCTGTGCCTGTCCCTGTACGTGCCCCCCGGGGCAGCCCCCTGCTCCCGCTGCGCGCCGGTGAAGACCCGGGTCGTGTCGGTGCCGCTGCGCTGCCGCGGAGCTCCGGGCCTGCGGGAGAAGCGCGTCGTCCTGGTGGAGGAGTGCAAGTGTGAGACCGGCGGCCAGGCCCCCGCACCTCAAACACCGAGGCACAAAGGGTTAAAGCTTGACTGA

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0010084 specification of animal organ axis polarity biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0003146 heart jogging biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008524 True 756 mRNA 0.68 2 3345535 3346773

Neighbor

gene id symbol gene type direction distance location
AMCG00008522 nfix,LOC107098150,LOC106517806 coding downstream 109969 3230842 ~ 3235566 (-)
AMCG00008521 nfix,LOC106601192,LOC107757045,LOC103393624 coding downstream 172564 3148638 ~ 3172971 (-)
AMCG00008518 rnf11a,LOC103044796,LOC107757048,LOC108441179,LOC107694828,LOC107583209,LOC108259033 coding downstream 214476 3128983 ~ 3131059 (-)
AMCG00008520 asna1,LOC107569530 coding downstream 223536 3116825 ~ 3121999 (-)
AMCG00008519 best2,LOC103354508,LOC106931010,LOC100695332 coding downstream 233851 3104606 ~ 3111684 (-)
AMCG00008528 NA coding upstream 9941 3356714 ~ 3370613 (-)
AMCG00008530 NA coding upstream 155989 3502762 ~ 3504414 (-)
AMCG00008531 NA coding upstream 174696 3521469 ~ 3528475 (-)
AMCG00008532 LOC106569090,LOC105012159,LOC107599908 coding upstream 207766 3554539 ~ 3557842 (-)
AMCG00008536 NA coding upstream 253995 3600768 ~ 3611264 (-)
G49614 NA non-coding downstream 370382 2974949 ~ 2975153 (-)
G49606 NA non-coding downstream 434907 2909662 ~ 2910628 (-)
G49547 NA non-coding downstream 521559 2823241 ~ 2823976 (-)
G49462 NA non-coding downstream 908778 2377005 ~ 2436757 (-)
G49419 NA non-coding downstream 985423 2359860 ~ 2360112 (-)
G49802 NA non-coding upstream 26771 3373544 ~ 3379324 (-)
G49806 NA non-coding upstream 43430 3390203 ~ 3392090 (-)
G49811 NA non-coding upstream 67408 3414181 ~ 3443909 (-)
G49810 NA non-coding upstream 79009 3425782 ~ 3437347 (-)
G49858 NA non-coding upstream 344607 3691380 ~ 3693261 (-)
G49605 NA other downstream 436870 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 643113 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 1260510 2073783 ~ 2085025 (-)
G49375 NA other downstream 1464573 1879621 ~ 1880962 (-)
AMCG00008466 NA other downstream 1505436 1819774 ~ 1840099 (-)
AMCG00008554 NA other upstream 84041 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other upstream 422911 3769684 ~ 3777354 (-)
AMCG00008602 NA other upstream 2240302 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 2308916 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 2402117 5748890 ~ 5885450 (-)

Expression


Co-expression Network