AMCG00008527


Basic Information

Item Value
gene id AMCG00008527
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3462403 ~ 3469127 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008527
ATGATTCCTCTTACGCAGaACCCTGTGCAGGAGTGGGgtgaggaggtggaggagggcgCAGTGTATGGCGTCACCCTGCGCAGGGAGCCCGTGCAGCCGCCCGAAGAGGGGGAGGCCCAGTCGTGCTTCAACTTCATCCAGTACCGGACCACCAAGGTGCGGCGGCTCAAGGGGGCAACGCTGGACAGACTGGTCACCGAGCTGCTGGAGCCCGGCGACGACGCCGACTTCGCAAAGATCTTCCTCTCCACCTACCGCGCGTTCACGGACACCAACACCTTCACCGAGCTGCTGTTCCACAGGGATGACACCACTGTTGACTTTGATGACAACATCTGCCAGATCTACCCAAAGAAGAGCAATCTGATCCCTGTGATCCAGACCTGGCTGGAGGAATACAGCAATGATTTCCGCGACCCCCCCCACTACCCCTGCCTGAAGCTGCTGCGCGTGCGTCTTCGCAAACGCCTCTGCTTTCGCCGGCTGTGCCAACGCGTCGAGGCCCTGCTGAAGAAGTTCCGTGGCGAAGAGACCACCAAGAAACACCAGGCCACCGTGGGCCGTCCGGAAGCCGAGTGGGACGGCAACGAGGAGGTACGCGACTTCCTGGACTTCCCCCCCGGGGACGTGGCCGAGCAGCTCACCCGATTGGACGCGGAGCTGTTCGTGAAGGTGCTGCCCTTCCAGTGCATGGGCTGCGTCTGGTCCCAGCGCGACAAGAAGGAGAACAAGCACCTGGCACCCACCATCCGCGCCACCATTGCCCAGTTCAACCGAGTCACCAACTGCGTCATGGGCACCCTGCTGTGCCAGGGGGGCGCCCCGCGGCCCTGCGACCGCGCCCAGCTCATCGAGAAGTGGATCAATGTGGCCCAGGAGTGCAGGCAGCTGAAGAACTTCTCCTCCCTGCGGGCCATCCTGTCGGCTCTCCAGTCCAACGCCGTCTACCGGCTGAAGAGGACCTGGGCCGCTGTCTGCAGGGACAGCATCACGGTTTTCGACAATCTGTGTGAAACCTTCCCCGACGAGAACTGCATCCCCAGCTGCCGAGAGATCGTTGAGGATGGGAGGAACTCCCCGAGCGAGGACGAGTCTCCCCAGTCCCCTAAACGCTCCACTGCATCCCCACAGACGAGCTCCAGCAGTGTCAACGTGCCGTACCTGGGTACCTACCTGACAGTGCTGACCATGCTGGACACCGCACTCCCAGACACTCTAGAGGGTGGGCTGATCAACTTCGAGAAGAGAAGGAGGGAATTCGAGATCTTGTCCCAGATCCGACAGCTCCAGTCTGCCTGCTCCAGATACAGCCTCAGCCATCACCCCCGGATCGCGGACTGGCTGAAGAGTCACAGGCTGCTGAGCGACCAGGAGAGCTATGACCTCTCCTGTGAGCTGGAGCCCCCTGTGGACACCTGCCCTGGCTCCCCCAGCTCATGGAGTCGCCGTCTGATGGCCAAGAAGGTGACCTCGCGGCTCACGGTGAGCGAGGGATGTGGGAAGACGAACCCGGACCAGATCAGCGTTTCCTCCTCGGGGTCCAGTGGATCTGATATGGAAGATctctcctcgtcctcctcctcgtcctacTCCCCCTGCAGAGCCAAATGCAAGATGCTGTCCAGCTCCTGCCACGACGTGGCCGAGGAGATCTTCGTCCCAGCCAGCTCGTCCAGCTCCTCCTGCTCCGGCTCCTCCGGCTCCAACTCCCAGCCCGACCTGTCGGCCGTGCCGCGCCACCTGCAGCACAAGCGGTCCGTATCCATGAACTCGCTGCCCATGTACAACCGACAGGTGGAGGACTGCTGCGTGATCCGCCTGACCAGCCAGGACAAGACGGCCCAGGTGATCCAGAGAGCGCTGGAGAAACACAACTTGGAAAGCAGCGGCTGCCAGCACTTCTCGCTCAGCCAGGTCATCTCCCAGGACCGAGAGCTGCTGATCCCGGACAAGGCCAACGTCTTCTACGCCATGTGCACCACGGCCAACTACGACTTCATCCTGCGGCAGCACTGGCGTGGGCACGGGACTCCACAGGGCTCCTCCACCAGCCCAGCCTCACAAGGCCGTCCGGGCAAGTGA

Function

GO:

id name namespace
GO:0065007 biological regulation biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008527 True 2082 mRNA 0.62 17 3462403 3469127

Neighbor

gene id symbol gene type direction distance location
AMCG00008525 NA coding upstream 36143 3417511 ~ 3426260 (+)
AMCG00008523 NA coding upstream 107008 3353105 ~ 3355395 (+)
AMCG00008517 NA coding upstream 325071 3131880 ~ 3137332 (+)
AMCG00008515 NA coding upstream 338267 3119109 ~ 3124136 (+)
AMCG00008516 LOC106601330 coding upstream 359620 3087180 ~ 3102783 (+)
AMCG00008529 NA coding downstream 98432 3567559 ~ 3581461 (+)
AMCG00008534 NA coding downstream 113994 3583121 ~ 3592683 (+)
AMCG00008533 LOC107553681 coding downstream 203574 3672701 ~ 3673436 (+)
AMCG00008540 LOC108440982,LOC108274416 coding downstream 215386 3684513 ~ 3688173 (+)
AMCG00008542 NA coding downstream 265741 3734868 ~ 3735113 (+)
G49753 NA non-coding upstream 17276 3444002 ~ 3445127 (+)
G49754 NA non-coding upstream 18506 3414181 ~ 3443897 (+)
G49738 NA non-coding upstream 102874 3356699 ~ 3359529 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 419808 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 551464 2910694 ~ 2910939 (+)
G49914 NA non-coding downstream 494001 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 555974 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 565622 4034749 ~ 4035052 (+)
G50011 NA non-coding downstream 838699 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 993235 4462362 ~ 4468763 (+)
G49583 smarca4,LOC102779508 other upstream 573507 2886766 ~ 2888896 (+)
G49523 NA other upstream 692359 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1250889 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1319009 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1354611 2088480 ~ 2107792 (+)
G49980 NA other downstream 686961 4156088 ~ 4160062 (+)
G49982 NA other downstream 692931 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 1092864 4561991 ~ 4572874 (+)
G50215 NA other downstream 2126896 5596023 ~ 5596799 (+)
G50243 NA other downstream 2269414 5738541 ~ 5742750 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G107952 NA non-coding NC_035909.1 CM008312.1 1214005 ~ 1221353 (-)