AMCG00008528


Basic Information

Item Value
gene id AMCG00008528
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3356714 ~ 3370613 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008528
GGAGGAGCCCCGCTGTCGCCGCGCTGCAGCGGAAGTGCAGGTACCTGTCCCGGCGACACTCCGCATTCCCTCAGAGCGCCTCCTCCGCCGCTCCGCCGCTCGGCCGCCAGCACCCTGTCCGGACGGGCTTCCAGTGCCGGCCGCCTCTCTGCCCCGCAGCTGCGCTGTCCTGCCGGCTCTGAAGACCCGCTCCTCACCTGGGGGTCAGCGCGGCCACCATGTCGAGCAACGGGAAAGAGCCGCCCGCCTGCGGGGACTCTCCTCCCATCGACCTGCAGTCGTCCTTAGAGGAATGCATGGAGGCCTTGGACCTGTTCCTCAACAACAAGTTCAGCGAGAGCCTGGACAAGCTGCGGCCACGGATCCGGGACAGCATGTACCACGCCCTCATCTACGCTACCATCCTGGAGATGCAGGCCATGATGACCTTCGAGCAGGACGACATCGCCAGCGCCGGCAGCACCATGAAGAGCGCGCAGGAGGTGTGCCAGAGGTTTCGGAAGAAGTCCACCGTGGTCGGCTCCATCACAAGTGTGGTCAGCAAGTCTTCTGGAGATGACTTCACTGAAGaggAGCTCCACGCCGAGGCCTGCTACGCCGAGTGCCTGCTGCAGAGAGCCGCGCTGACCTTCCTACAGGATGAGAACATGATGGGTTTCATCAAGGGAGGCATCAAGGTGCGCAATAGTTACATGATATACAAGGAGCTGCACGGCTTCACGCAGGCGCACGGTTTCCACAGGGGACCCAGCCACACCCACTTGGAGGGGGCAGTGTCTCTGGGGATCGGCGCCTTCAACTTGacGCTGTCGCTCGTCCCGCCCCGCATTCTCCGGCTCTTGGAATTTGCTGGCTTCTCTGGGGATAAGGACTACGGACTCTCCCAGCTGCATGAAGGAGCCACCTCCCTGAACCTGCGCTCCATGCTGTGtgccctgctgctgctctgcTACTACACCTTCCTGTCCTTCATTCTGGggacGGGAGAAGGGGAGGTGACTGAAGCTGAGAGATTGCTGAAGCCGTTCCTGGTTCGATACCCTCGGGGGGCCATATTCCTGTTTTTCGCAGGCCGAGCCGAGGAGATAAAAGGGAACATAGACGAGGCGGTGGCGCTGTTCGACGAAGGCTGCAAGGCCCAGCAGGCGTGGAAGCAGTTCCACCACATGTGCTACTGGGAGCTGATGTGGTGCTACACCTTCAAGAGGGCGTGGAAGATGGCCTACTTCTACGCCGACCTGCTGAGCAAGGAGAGCCGCTGGTCCAAGgcCATGTACGTGTACATGAAAGCCGCCTACCTCAGCATGCTGCCTGTGGACGAAGCCCGGCCCTTTGGGGAACAGGAAGTGGAGCTCTTCAGaCAGGTGGACTCCTTCAAACAGAAGATAGCTGGGAAATCCCCCCCAACCGAGAAATTCGCCATTCGTAAGGCGCGCCGCTACAAGGCCAGCTCACCCGTCCTGTTGCCAGTGCCTGTGCTGGAGATGATGTACATGTGGAACGGCTTCACCATGATCAGGAAGCGGCCGGAGCTGACGAGGGGAATGATGGAGACGCTTCTGGAGGCAGAGCGCACCCTGCAGGAAGCACCAGCGAATGACTACTCTGTGGACGACCGCAGTGTGATCCTGCTGCTGAAGGGACTTTGTCTGAAGAACGAGGGACAGACCAGGGCTGCGGAGGAGTGTTTCCTTCAGGTCTACAAGAGTGAGAAGAAGATCAAATACGACAGCTACCTGGTGCCCAACGCCTTGCTGGAGCTCAGCCTGCTGTACATCGAGATGGGCCGCAAGGAGGAGGCCGTCAAGCTGCTGCAGCGTGCCAAGACCCACTACAAGGACTACTCCATGGAGTCGAGGACTCAGTTCCGGATTCACGCTGCTCTCTCCAAACTCAGAGCCAACACCGACGACACAGAGGAGGCCTCCAGCACACAGCTGTGACGGACAGACCTGCCACTCCCGTCCCGATCTCCCTTCCGCCCCCCGTTTGACAAGAGAGCCACGCACCTACAGCAGTTTAGCCAGGCTGAGGGCGGGTCAGTCCCGTCAGCCTGCTCCTGATTGGTCTGCACCGCTAGCGGATGAGCTGCCAGCGACAATCTTTAACCCCTTGCTTCCCCCCGAACTTTTATTCCTGCCAGACACCTCTCTAGTGTTTAGTTTGTTAAATTGTATACAGAAGTTTAaatttcatcatcatcatcccaCCTGGGGAACAGTTAATGGGGCGAGGTGATGTCATTTTTCTGAGAGGACTGCAATAGCAGACTATTTTGAATTCCTTTTGTTCCCTCTCCTCCCTGCTTGTGTTTACCGCGATTTGCGGTGTCTTTCCCATGTTCGTGTTGGCGGCGCTCCTTTAGCCGTCCAGTTAAAAAGGTTTTGGGATACTATTCTTTTTGTGTCCCTTTTTAACAAGTTTTGTACAtgattgaaaaacaacatatcCATCTGTAGTGTGAACTGACCAACAGGAAGCCCCTCTccacccgtctgtgtgtgttggtctGTACGTGAACAGTGTTCACAGAAGCGGCTCGGTGGGAGACCATGCCATACAGACCTCTGGGAAAAACCCACCTGGGTCAAGTGGGTCTATTGACACTGTGGATCCTGTGAGAGCCTGGCTCCTCCCCATCCCTTTGAAACGTGCCAACCTCGCTGTTTTTCTATGCGTTTTTAATTGTGCACTAGCGTGGGTATTCACCGAGAGAACCAAGTGTTTTTAGATGTTTACGGTTCTTACAAGCCTGGTTCCAGTGGACTCAGCTCTGCCTCAACACCTGTCCTGGAGACACCGGGCGGAGCGTGTAGGTTGTAATTTAGCAACGAGATAGTGTATCCCCAAACGTCCCATAGACACAGTGCAGTAAAGCACTTTTTACTCCTATTCAGAACTTCTCATTATGGGGCCTCCTCATGCCATGCTACTTAACCATAAACCATCTGAGACCTACTGGTCATTCACTATCACCCCCCAGCTCAGAACGGATTAGCCCACCTTAGTACCTCCACatgcaaatataatacatatagaGACTACACAATTCCACTGTGCCAAACAATCCACATTCCAGCTGCAATAAGAGCTCTAAACCACAGGGTGCATAGAGACTGTAGGAGCTTAGCTCATCTCAACCTGGCATGCGGTGATAACCGGTGGCGCAGGACAGTGGGGGTAAGTTGTGTGTGAAGGGAAGACAGACTGAAATCCTCCAagacctttttaaatgtttagaaaaaaatatttcatattcaaaccGGTCCTGCAAGCCAGAAAGCAGGACAGGGGGTGTGGGAATGAACACCCCACGAATGAAAGCCATATGCACGAAATACATATACACCCAGCGTGCCTTCCACATCTCCGTGCTGGGGTGAGATTTCTCAGCGATGCTCCCCTTTACAAAGGGCTCAATTGTGGATACAGTGCCTTTCTGCAGTGGCTCAGGGCTGGGtcacacactacagcacagcctTACTGCGTCAAGGCTGTACACTTCAGTGTTTTAGCCTTGTATCGAGGGTGCTTTCTATTGTTAAAGACACGATACTGTAATAAAAATTGTTCTATTTAACCTTTAAA

Function

GO: NA

KEGG:

id description
K24943 TTC39; tetratricopeptide repeat protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008528 True 3588 mRNA 0.55 19 3356714 3370613

Neighbor

gene id symbol gene type direction distance location
AMCG00008524 NA coding downstream 9941 3345535 ~ 3346773 (-)
AMCG00008522 nfix,LOC107098150,LOC106517806 coding downstream 121148 3230842 ~ 3235566 (-)
AMCG00008521 nfix,LOC106601192,LOC107757045,LOC103393624 coding downstream 183743 3148638 ~ 3172971 (-)
AMCG00008518 rnf11a,LOC103044796,LOC107757048,LOC108441179,LOC107694828,LOC107583209,LOC108259033 coding downstream 225655 3128983 ~ 3131059 (-)
AMCG00008520 asna1,LOC107569530 coding downstream 234715 3116825 ~ 3121999 (-)
AMCG00008530 NA coding upstream 132149 3502762 ~ 3504414 (-)
AMCG00008531 NA coding upstream 150856 3521469 ~ 3528475 (-)
AMCG00008532 LOC106569090,LOC105012159,LOC107599908 coding upstream 183926 3554539 ~ 3557842 (-)
AMCG00008536 NA coding upstream 230155 3600768 ~ 3611264 (-)
AMCG00008535 NA coding upstream 248036 3618649 ~ 3625092 (-)
G49614 NA non-coding downstream 381561 2974949 ~ 2975153 (-)
G49606 NA non-coding downstream 446086 2909662 ~ 2910628 (-)
G49547 NA non-coding downstream 532738 2823241 ~ 2823976 (-)
G49462 NA non-coding downstream 919957 2377005 ~ 2436757 (-)
G49419 NA non-coding downstream 996602 2359860 ~ 2360112 (-)
G49802 NA non-coding upstream 2931 3373544 ~ 3379324 (-)
G49806 NA non-coding upstream 19590 3390203 ~ 3392090 (-)
G49811 NA non-coding upstream 43568 3414181 ~ 3443909 (-)
G49810 NA non-coding upstream 55169 3425782 ~ 3437347 (-)
G49858 NA non-coding upstream 320767 3691380 ~ 3693261 (-)
G49605 NA other downstream 448049 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 654292 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 1271689 2073783 ~ 2085025 (-)
G49375 NA other downstream 1475752 1879621 ~ 1880962 (-)
AMCG00008466 NA other downstream 1516615 1819774 ~ 1840099 (-)
AMCG00008554 NA other upstream 60201 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other upstream 399071 3769684 ~ 3777354 (-)
AMCG00008602 NA other upstream 2216462 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 2285076 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 2378277 5748890 ~ 5885450 (-)

Expression


Co-expression Network