AMCG00008529


Basic Information

Item Value
gene id AMCG00008529
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3567559 ~ 3581461 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008529
ATGCAGCCGGTGGCGTCCCGGCCTCTGCCCCCGCGGCCCAGTTCGGTGGGGGCGGCGCGGGAGGTGAATGCGTTGTGGCGGTACCTGCAGGACAGCGGGCTGCAGCGCTGCGTGGAGGAGCTGTGTGCGGAGACGCTGCGCCACCCGAACCCCCCCGCCAACCCCTACCCTGGCTTCTCCCAGCGGGCAGGACAGCTAGCAGAGAGgCTCAGGCTGGCGGAGTCGGCCAGTGAGGAGACCTTCCAGATTCACCTCGCTTTCCCAACATCCTCCACTGCTGTCCGGTATATCGCAGGTGCGAAGGGCTGTTCCGGGCTCTGGGGCCTTCCCAGCGTCCTGCACTGTGTCGACCCGCAGCAGATCGAGCGATTCCGCTGGCTGATTGAGGACGTGACCCCTCCGCTCGCCAGCCTGAGTTGCAGCAGCCCGTACTCGATCCAAGTGCTGGCCGCTCTCACAGGCCCCTGCGTTTTCATGGGGACCCTCTTCCCCTGCCCCCCGTCCCTGGACCTCCTCCAGATCTACGTCATCGCCGGGCCAGACCCCGAGCGGGCGCGCACCCTCTACGCACAGTGCGTCCGCCGTGATGTCATCAGGATGAGCCAGCAGGGCCGCCACCGCCTGCTAAGaaTACTTGTTCCAACCAACAACAAAGGAGAAAATAAGTCATTTTCAAAGGAGGAAGTGTCGTCCCGAGGGCCGGAGTTTGAGGGTGCGGTGCTGAGCTCTCTGGACGACCGTCTCCCGGTGCGAGCGGAGTGCGTGTGGAGAGTGGACCCCCAGGGCACATGGCACCAGGGGGGGAGCAAACTCTACACCCTGACTGCCATCCAGACCGCAGGGCGTCACGAGGAGGAGAGGGTGCTGGATTTCTCCGAGAGCCCCCTGACGCACCTCGCCAGCAGCGTGTTCCCCTGCCAGGCCCAGGCCGAGGCCTACGCCCGCATCTTCCTGCCCAGAGAGCCGCCCAGCCCGGACCCCAGCTCAGGGGGAGCTGCGGAGGCCGGGATTCTGGCTCCGGTGCGGGACGTCCTGCTCCGGAAGCTTGACGCCCTGCAACTGCCCCGGGATGCCCTCCCCGCCGCCCACCTCTgcgtcctgctgctgctgctgccgccgccaGACACGGCCGGGGAGGCAAGAGCCCAGGGGCACGAGGCTGTGGCCCAGCTGTACCGGTTCTTGCGGGGCGGCGCCGGACGGCTGTGGGCGCTGCAGGAATACGCTCTCACCCTCTGCAGAGTCCTGGAGTCCCAGGCCGGCAAGGCTGGGGACGTGCAGCTGTGTGGCGCTCTGGCACAGACGCTCAGGGGGCTGATGGAGGGGTTTCTGACCCAGGTTGGCAGGGTCAGCTTCTCCAGTGACGCCCTCTTCCTCACCGAGAACCTGAGCAGCCGCCTGCAGTCCTGGTGCGGGTACAGCTGTGTGCTGCAGTGCCAGCTGCTGTCCAACTCTCTTCCCTGGGTGCCGGTCCTCTCCGAGCTGAAGCAGACGGCCGACCGAGCTGCCGGGCCGCAGCCAGGGAATGGGCGGCCACAGAGCCCCCCAGAGTCCGTAGAGAGGTGCTCAGTGTACACCCAGGAGCTGCTGTACCACGCCGAGCGCCGAGCCGACCTGTCCCGAGGGGGAGGAGCTGCGGACATGGGCGGCCTGGAGCTGCAGGCCCAGCTCTCTCAGTACCTGATCGACTGTGCCGTGGACCAGTGCTGGCAGCGGTGTCTGTGGACGGTGCTGTCCTCCTCCCCGCCACCTGCCAACCCGTACCCCGCGGTCGTGGAGGAGTTCAGGAGAGCCGCACTCAGGCTGGCTCTGTGGCGCAGCTCTGACGCCCAGCTCCTGAAGCAGGTGCTGCCGGGCTCCTCTCGTCCCTCAGACGGGGGGCTCTGGCTGCACTGCGGCCCAGGGGGAGAGGGGCACGGCCTGGAGAGCGCCATGCGAGCCGCCGACCCCGTCCAACTTCCCGCCACCCTGCGCCGGGCCCTGCCACTGCGCTGCCAAGACCGCCCCACCGCCGGGAGCTTCCAGGTGGCGACCGGCCTGGCGGTGCTGTCTCCGGCCACATGGCTGGGATCCCTCAGCCCCTTCCTGCGCTCCCTGGAGGCCGTGGAGAGGGGGGGGGCCCTGACTGCGTACACCGTGCACCTGGGCCGGGGGGAGGCGTGGGGGGAGCGTCGCATTGCAGAATTCCCCTCCGCCTTCTCGGAGCGCCTGATCGAGGACCTGCAGGAGGGGCGGCCCGTCTGCCTCAAGGCCTTCCAGCCCCCCGGGCCGTCGGAGTGGCGCTTCCTGCCCCTGGTCAAGCGCTTTGTCCTGTACTATCTCCAGCAAGGGGGCGCCGGCTGGCTCTGCTTCCCCAGGCACGACCCGCTGACCGTCCACCGGGCTGTCTTCCTGTCCCGAGAGCAGGCCGCCTTCCACCTGCGCTGCGTGGGGCCAGCTGGAGATCCTTTCAGCTGCGCCAACCTGCAGGAAGTCATGTCGGCCCTAGATCCCCAGATCACCGGCTGCTTCCTGAGAGGAGAGTGGCAGCCCATGTACAGGCTGCTGGCCCTGCGCGCCCTGATCACCGCAGAGGATGCCCTGCTGCCGGCCTGCTGGAGGATGGCACACAGCGCGGGCGCCCAGCTGGAATATCTCCAGAGCGCCGCCCGGACCCTGCAGGAGCTGTCTGAACTGTCCGGCAGTGGGCAGACCCTCTCAGAGCACCATGCGGCTGTAGACGTCATGCTGCGGGGCTTTATCTGGACCCTGCGGAGGACTCTGGAGCACCCTGACTCTCTGGCCCCCCCGGCGCTGTGGGAGGTGGTCCGGCCGGGCCCGGGGCTGGTGTGCGGCGGGGGGGGTCCGGCCTGGCTGCGGGCTGCAGCCGCAGTGTGCGGGGCCCTGTCGGACAGCCTGGCCCGGGACCTGCACTCCCTGTGCCCCGCGGTCCGGGCCCTGCTGGACAGGCTGCTGGACGCACAGAGCCGGAGGGCCGTGAGAGCGCAGGAACACTCCCCCCGAGCGGCCCGGCCCGGCACACTCCCACCCCCCCCGCCTGCGCCGCCGGGTCCAGCGCACCGCAGCCCCGCGCACCGAACCCCCGCGCAGGCCCTGGACTCCTACTAGCCCTGCGGCGGCCCGATCTGGGCAGAAGGAGCTCTAGGGATATAAACGAGCCCCCCAGTCATATTAAAGACAATCATTTTTTACAATCATATTTCTTGTCACGACTGAAAATACATCTTTGCTTCTGAG

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008529 True 3237 mRNA 0.68 21 3567559 3581461

Neighbor

gene id symbol gene type direction distance location
AMCG00008527 NA coding upstream 98432 3462403 ~ 3469127 (+)
AMCG00008525 NA coding upstream 141299 3417511 ~ 3426260 (+)
AMCG00008523 NA coding upstream 212164 3353105 ~ 3355395 (+)
AMCG00008517 NA coding upstream 430227 3131880 ~ 3137332 (+)
AMCG00008515 NA coding upstream 443423 3119109 ~ 3124136 (+)
AMCG00008534 NA coding downstream 1660 3583121 ~ 3592683 (+)
AMCG00008533 LOC107553681 coding downstream 91240 3672701 ~ 3673436 (+)
AMCG00008540 LOC108440982,LOC108274416 coding downstream 103052 3684513 ~ 3688173 (+)
AMCG00008542 NA coding downstream 153407 3734868 ~ 3735113 (+)
AMCG00008544 NA coding downstream 156285 3737746 ~ 3738114 (+)
G49753 NA non-coding upstream 122432 3444002 ~ 3445127 (+)
G49754 NA non-coding upstream 123662 3414181 ~ 3443897 (+)
G49738 NA non-coding upstream 208030 3356699 ~ 3359529 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 524964 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 656620 2910694 ~ 2910939 (+)
G49914 NA non-coding downstream 381667 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 443640 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 453288 4034749 ~ 4035052 (+)
G50011 NA non-coding downstream 726365 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 880901 4462362 ~ 4468763 (+)
G49583 smarca4,LOC102779508 other upstream 678663 2886766 ~ 2888896 (+)
G49523 NA other upstream 797515 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1356045 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1424165 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1459767 2088480 ~ 2107792 (+)
G49980 NA other downstream 574627 4156088 ~ 4160062 (+)
G49982 NA other downstream 580597 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 980530 4561991 ~ 4572874 (+)
G50215 NA other downstream 2014562 5596023 ~ 5596799 (+)
G50243 NA other downstream 2157080 5738541 ~ 5742750 (+)

Expression


Co-expression Network