AMCG00008536


Basic Information

Item Value
gene id AMCG00008536
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3600768 ~ 3611264 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008536
ATGGCAACAGATCCGAGAAGCCCCCACAGTTCCGAGTCCGAGGCCTGGGAGATCTCCGGCCCGCCGACCGACGCAGACACGGACCCCACGGACGACCCCGCTGTGGTCAGCGAAGCACCCAGGGCCGAGCAGGAGGAGGCCTGGCCTGATTTGCCCGAGCCAGAGTGGCCGGCTGAGGGGGCCGCCCTCCTGAGCCCAGACCAAGCGGAGGAGGGTCCGCACCTCCGGAATGTGGATACCGCTGAGGGCACATCAttcctgcctgcctgcctggcaGCTGTCAGTCTGGCTGGGCCACCGGAGGGAGCTGCCCGGTCACAGGTGCTCTGTGACACCCTGCAACATAGTGGGGCCGGGGAGGGAGAGTCTAGGGGCACAGCCGTCCCCTACTCCACCAACACTGTGGCAGGGGAAAACCGGGACCTTTTCGACTGCCAGGAGTGGCCACCCACCCCTCTGGACCTAGACCCGGAGGAAGGGGCGCCCGAGGAAAGGAGGGAAGGAGGTGATGCGAACGAATCCCACGCTAACGAGAGGCTTTCCAAGCAGCCACCTGTCCTGCAGCCTGCACTGGAGACGGACATGGCAGGAGAGGCAGACACCCAGCTGCGCGAGACCCTGGGGGCTGCGGCCGTAGCAGGGGCCGGTGAGAGTGTTGACAGTCAGCCTCTGGACTTCGGCAACGCCAGGGAGCAGTGGAAGATGCTGGAAAGCAGCAGCAGTGGAAGCAAGGCCCCCCAGCCTTCCTTCCCCAGCAGCTCCTTGAGGAACCAGTTCCAGGAAACACCCTTGTCCCCCTCCAGCTGCCGGAGAGATCTCCCGGAGGGTGCAGTCACAGGCGCGGTGCACCAGGGGGAGCTCCGGCACCACCTGGTCGCCCAGCTCCAGGGGCAGAAGCAACCGGTGCGGCAGCGCCCGCCCCTAGCAACAGTTGCCTGGGAGCCGGCCAATGCGGGGCCCGGCTCAGAGAGTCCTGCTGTAGTCAGGGAGCTCAGCAGGGAGGCGGGGGGGGAGGGGCCTCCAGGAGGTAGACTAACAGGTGGAGAGCAGCAGGAAACAGCTTGCACGGGCGAGGCAGCGAGAGAGACGCACCGGGGATCCCACAGCAGCGCACACGGCAAGGCGCCAGTTCACACAGAGGACACTGCGGCCGGCCAGAGAGGGACAATGGAGCTGGACAACGGGGATGACAATCTCAGCGACAGCGGGGTGTCTGCCGACTTCTCCCCCGGCAGCACCCTGGAGTTCAACTCCTCTCCCCCTGCAGAGCCGCCCCCGGCCAACGAGACGCCCATCGAGAGGGAGATCCGGCTGGCCATGGAGAGGGAGGATAACCTGCGCCGGGCTCGGGGCATCTCCCGGCGCAGCGTGAGCGAGGAGTACGTGGACATCCCCCTGAGGAAGCCCATCCTGTCCCAGAGCCTGCCCTCCAAGTCGCTCAAAGGCAAAGACCGGCACTTTGCTGGCAAAAAGATGCAAAAGGAGATCAGCATGGACACCAAGCGGGAGGAGGACCTGGTGCAGCTGGGCACAGTGCCGGGTGACTACGACAAGGGCACCATCCGCCACCTGCGTGACAAGAAGCGACTCTTTGAGTTGTTCCAGGAGAGCCAGGAACCAGCCATACCGCCCAGTAAGACCACTGACGACACCGGGCTGGGCGGATCGCCCCGATCTCTGGTACCGGAGAGGCGGAGGAGTCTGGATCTACTGTCCCAGAGCCCGGCCCAGAGCCCGACCCAGAAGACACCCAGCAGCAGCGGTGGCTCGGTGCCCGACGGGGGGCCCAGAGGCCCGTCTTTCGCTGAGAGGACCCCCAGCAACGTCATCATCCTGGAGAACACCATCAGACTGCCGTCCCCGGCGCTCCATACCCCGCCGGACAGGAGCAGAGCACCCAGCAGCCACGGGTCCATCTCGGATGGGGAGCGCATGACAGTCCTGGATTCCAGCAGCCTGTTCTCCCCGGGCAGCTTCACCCGCAGCCAGCCGGACGGAGGGATGGCAATGGAGACGGAGGACGACGCCCCCAAAGAGAACCCCTTCTTCAAGCTGCGCTCCTCCATGGGGCTGAGGCCGGAGGTGGAGCAGGACATCCGTGAGGCGCAGCAGAGGGAGCAGGAGCTGCGGCGCCAGCGGTACAGCCTTTACGGCAGAGGGGACAGCTGCGGCCCACCCAGCACtgagccccccacccccagccgcACCCCTACCCCCAAccgcacccccacccccaacggGCTGCCCACCCCGTCACCGTCCCCCTCGCCCACCCCTTCAGCGCGGCAGTCTCTGGGGAAGCTGGACGTCACCTGGCCCCCTCCCAGCCAGAGCAGCGAGGAGGCCCCCATCCAGACAGAGATGGACCGGAGCCCCAAGGTGCCCCGGCAGAAGACGCCGCTGCTGCAGCGCTGGGAGACGGGCATGGTGAACGGTCATGCCGAGGAGGACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008536 True 2454 mRNA 0.67 3 3600768 3611264

Neighbor

gene id symbol gene type direction distance location
AMCG00008532 LOC106569090,LOC105012159,LOC107599908 coding downstream 42926 3554539 ~ 3557842 (-)
AMCG00008531 NA coding downstream 72293 3521469 ~ 3528475 (-)
AMCG00008530 NA coding downstream 96354 3502762 ~ 3504414 (-)
AMCG00008528 NA coding downstream 230155 3356714 ~ 3370613 (-)
AMCG00008524 NA coding downstream 253995 3345535 ~ 3346773 (-)
AMCG00008535 NA coding upstream 7385 3618649 ~ 3625092 (-)
AMCG00008553 NA coding upstream 208751 3820015 ~ 3822415 (-)
AMCG00008558 NA coding upstream 279654 3890918 ~ 3912084 (-)
AMCG00008557 NA coding upstream 330904 3942168 ~ 3946340 (-)
AMCG00008563 farsa,LOC107679365 coding upstream 358082 3969346 ~ 3980969 (-)
G49811 NA non-coding downstream 156859 3414181 ~ 3443909 (-)
G49810 NA non-coding downstream 163421 3425782 ~ 3437347 (-)
G49806 NA non-coding downstream 208678 3390203 ~ 3392090 (-)
G49802 NA non-coding downstream 221444 3373544 ~ 3379324 (-)
G49614 NA non-coding downstream 625615 2974949 ~ 2975153 (-)
G49858 NA non-coding upstream 80116 3691380 ~ 3693261 (-)
G49860 NA non-coding upstream 109705 3720969 ~ 3735477 (-)
G49863 NA non-coding upstream 111965 3723229 ~ 3809262 (-)
G49871 NA non-coding upstream 168511 3779775 ~ 3781104 (-)
G49984 NA non-coding upstream 550911 4162175 ~ 4163650 (-)
G49605 NA other downstream 692103 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 898346 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 1515743 2073783 ~ 2085025 (-)
G49375 NA other downstream 1719806 1879621 ~ 1880962 (-)
AMCG00008466 NA other downstream 1760669 1819774 ~ 1840099 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other upstream 158420 3769684 ~ 3777354 (-)
AMCG00008602 NA other upstream 1975811 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 2044425 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 2137626 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 2175356 5786620 ~ 5793995 (-)

Expression


Co-expression Network