AMCG00008537


Basic Information

Item Value
gene id AMCG00008537
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3777492 ~ 3781027 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008537
ATTGGCTCTAGTGAGATTCTTTTTGCATATTAATGTTCAGGAAATGCGGAAGTGATCGGTGGCGTTTTGTAGGGGGCGTGGGGACCTAGTTGCCAAGGGGGCGTTTGTGATCACTGAACTTAGCCCACGGAGGAGGGGTGCAGAAGAAACTGGAAAAGTTGAGGTAGCTGCACTTTTCACAGGCATTTCTGCTCCGTAAACAGACCAACGACACGTGGCGGCTGCCTGTGGAAGATAGAGCCGGTGTCAGAGGCAGTTGCATGGGGGTGTGTTTCTCTGCACTCTGTACCCACATGGTCTGGTCTGCAAGCATGCACAGCTCGACGTCATCGTCCTGCTGAAATCCctgttgtaaacaaacaaacaaaaccgtGCAAGACTTGGGTGAGCGGTCATGGTGACGGAAGGGGAGCCCACAGATCTGGTGAAGGTTTTCCACCTCCTGATCCTGTCCACGTCCTGGGGCGTGCAGATCTGGGTCACATTTGTTTCTGGGCTGGTCCTGGGAGCGGGCGTTCCTCGGCACATCTTCGGCCTGGTGCAGAGCAAGCTGTTCCCCTTCTACTTCTACGGCCTCCTGGGGTCGTCTTTCCTCAACCTGGCGGTGTATGCTGGGTACCACCCCCGGGAGCTGCTGGACAATCATGAGACAGTGCAGATGGGTCTGTTCTTCGGCGCGTTGATACTGGCGGGTCTGAATGCCCAGTGGTTCGGCCCGGCCGTCACTGAGTTGATGCATCAGATGCACGAGGTGGAGCGGGAGCACGGGCTGGGAGGCGAGGTGGGCTTCCGCTCCAACAAGGAGGGCTACACCAAGCTGCGCGAGCAGGACCCCAAGTACAAGGGTCTGCGGAGCTCTTTCTTCCGCTACCACGGCCTGTCCTCCCTCTGCAACCTGCTGGGCCTGCTCTGCACTGGCGTCAACCTGTGCTATGCCGCCCTCAACCTCCGCACCATCTGACCCCCCCGGGGAGCCTCCGCAGCCGGAATCGGATCGGCCTGCTGTAGCAATAGGAGCCTCGTCTGTTTCTTGTAGGCGTCTCCCTGGCCACTGCCGCCACCGATCTGGAAATGTGAATCTGGTCCAGATTATTGTTTTACAGCTACATTTGCTATTCCCCTCTGTGCTATTTTACACTAAAGTTGGATAGTGACACATAAACAGAACAGTCACAGGACAATCAGTTTAGACATTCCTTTTCCTAATGTTTTTAGctaatcaaaaatgtattacagagATCAATActcattatttatgtttgtgtggtCCAAAACTGCTTTTTCTGATATGTAGAAATTAATATGGGctggctgcaaagggttaaatgtatttaccaGACATCGGtatattgttacattgtttgACATCATACTTGATCATAAAACAAAGTATGTAtctgtctctccctttctctctgactccccaagatgtttccccttgcttcaatctacagattatcttttccatgtcacacctgcaaagtttaagATTGAATCTTCCAATCTTTTATGTgattgtcttctaggtcttttctatatatatatatatatatatatatatatatatatatatagaaatgatATCACCCACAGACAATCAAAATTAAGTAgctgtgaattattttattaatttgactggtaataaaatggaaaatgttgatCAACATGTTTGCTAGACTTGAGCCATATTGTATTAAGaagtgtgattgttttttttaacaataaacattttgaattatacATTCTCTTTGCTTTAATTTAGGTAGAACTGAATGTGTCTCAAGGCGCATTTACAGATTAGTTCCGCTGGAGGGCGCAAAGTGCATTTGACAAGCACAAAGACTCGTTACAAAAAATGTCACGAGAGatgtatgtaataaaaaatgcaattaaatgagTTTGTTGAAATCTACA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008537 True 1914 mRNA 0.47 6 3777492 3781027

Neighbor

gene id symbol gene type direction distance location
AMCG00008538 NA coding upstream 6155 3758827 ~ 3771337 (+)
AMCG00008546 NA coding upstream 30684 3746220 ~ 3746808 (+)
AMCG00008541 NA coding upstream 31387 3745827 ~ 3746105 (+)
AMCG00008543 NA coding upstream 33810 3742829 ~ 3743682 (+)
AMCG00008545 NA coding upstream 34825 3738624 ~ 3742667 (+)
AMCG00008539 NA coding downstream 2522 3783549 ~ 3785692 (+)
AMCG00008548 LOC106601364,LOC106601190 coding downstream 8568 3789595 ~ 3809072 (+)
AMCG00008549 NA coding downstream 30558 3811585 ~ 3819176 (+)
AMCG00008550 znf653,LOC106601191,LOC106601361 coding downstream 42967 3823994 ~ 3834579 (+)
AMCG00008551 NA coding downstream 56106 3837133 ~ 3844620 (+)
G49753 NA non-coding upstream 332365 3444002 ~ 3445127 (+)
G49754 NA non-coding upstream 333595 3414181 ~ 3443897 (+)
G49738 NA non-coding upstream 417963 3356699 ~ 3359529 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 734897 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 866553 2910694 ~ 2910939 (+)
G49914 NA non-coding downstream 182101 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 244074 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 253722 4034749 ~ 4035052 (+)
G50011 NA non-coding downstream 526799 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 681335 4462362 ~ 4468763 (+)
G49583 smarca4,LOC102779508 other upstream 888596 2886766 ~ 2888896 (+)
G49523 NA other upstream 1007448 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1565978 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1634098 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1669700 2088480 ~ 2107792 (+)
G49980 NA other downstream 375061 4156088 ~ 4160062 (+)
G49982 NA other downstream 381031 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 780964 4561991 ~ 4572874 (+)
G50215 NA other downstream 1814996 5596023 ~ 5596799 (+)
G50243 NA other downstream 1957514 5738541 ~ 5742750 (+)

Expression


Co-expression Network