AMCG00008539


Basic Information

Item Value
gene id AMCG00008539
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3783549 ~ 3785692 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008539
ATGTCAGTGAGCCACACAGTGAAGCTGCTGGGGCTGGGGGTGGTGGTGGCCACCTTGAGCCTGGAGGGCCTCCTCTGGCTGTACCAGCGGCTGCGGCAGTGGAGCTGCGGGGGCCCCCTGAAGGAGGTCCTGTTCTTCCCCGCCAGCATGACCTGCGTGGAGCATCTCTTCTGCCCCCCCGGGGACGGGCCCTGCCCCTGCCCGCTGCCCCACGGCCCCGAGACTTCCTTCACCCGGCTCCTGCGCCACCTGCTGTCCGCCCGCGCCACGCTGGACCTCTGCCTGTTCTCCTTCTCCAGCCAGGAGCTGAGCCGGGCCGTGCTGCACATGCACCGGCGGCGCGTGGCCGTACGCGTGGTGATCGACAAGGACTACCTGGACATCAACGGCTCCCAGGTCGGCCGGCTCCTCAAAGCAGGCATCTCTGTGCGCCACGACACCGGCAGCTACTTCATGCACCACAAGTTCGCGCTGGTGGACGGGCGGCTGCTGCTCACGGGCTCCCTGAACTGGACCATGACGGCTGTGCAGGGCAACCGGGAGAACGTCCTGGTGACCGAGGACCCCGCCTTCGTCAAGCCCTTCCTGCGGGAGTTCGAGGAGCTGTGGACAGCCAACGACCCTGCCGCGCCGGCCCCGACCCTCGCCTGA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0030719 P granule organization biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0007286 spermatid development biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004518 nuclease activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0035755 cardiolipin hydrolase activity molecular_function

KEGG:

id description
K16862 PLD6; mitochondrial cardiolipin hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008539 True 651 mRNA 0.69 2 3783549 3785692

Neighbor

gene id symbol gene type direction distance location
AMCG00008537 NA coding upstream 2522 3777492 ~ 3781027 (+)
AMCG00008538 NA coding upstream 12212 3758827 ~ 3771337 (+)
AMCG00008546 NA coding upstream 36741 3746220 ~ 3746808 (+)
AMCG00008541 NA coding upstream 37444 3745827 ~ 3746105 (+)
AMCG00008543 NA coding upstream 39867 3742829 ~ 3743682 (+)
AMCG00008548 LOC106601364,LOC106601190 coding downstream 3903 3789595 ~ 3809072 (+)
AMCG00008549 NA coding downstream 25893 3811585 ~ 3819176 (+)
AMCG00008550 znf653,LOC106601191,LOC106601361 coding downstream 38302 3823994 ~ 3834579 (+)
AMCG00008551 NA coding downstream 51441 3837133 ~ 3844620 (+)
AMCG00008552 NA coding downstream 70880 3856572 ~ 3861390 (+)
G49753 NA non-coding upstream 338422 3444002 ~ 3445127 (+)
G49754 NA non-coding upstream 339652 3414181 ~ 3443897 (+)
G49738 NA non-coding upstream 424020 3356699 ~ 3359529 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 740954 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 872610 2910694 ~ 2910939 (+)
G49914 NA non-coding downstream 177436 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 239409 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 249057 4034749 ~ 4035052 (+)
G50011 NA non-coding downstream 522134 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 676670 4462362 ~ 4468763 (+)
G49583 smarca4,LOC102779508 other upstream 894653 2886766 ~ 2888896 (+)
G49523 NA other upstream 1013505 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1572035 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1640155 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1675757 2088480 ~ 2107792 (+)
G49980 NA other downstream 370396 4156088 ~ 4160062 (+)
G49982 NA other downstream 376366 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 776299 4561991 ~ 4572874 (+)
G50215 NA other downstream 1810331 5596023 ~ 5596799 (+)
G50243 NA other downstream 1952849 5738541 ~ 5742750 (+)

Expression


Co-expression Network