AMCG00008548 (LOC106601364,LOC106601190)


Basic Information

Item Value
gene id AMCG00008548
gene name LOC106601364,LOC106601190
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3789595 ~ 3809072 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008548
aaaagaaatggaagaGGTTTCATACAGATACGCCCTCTAGAGCTGCTGATGGTTCGCCAAGTTGAACCGAGCTGTGTTGATTGTGAAggtctggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggggatcgGAAACAAATACGTGTTGGGAAACAACTATCCTGGGAAGTAACTGGGCTCAGTTCAATAGACACCTGGTCGTGAAGAGGAGGTCTCGTCTGATCCGCGACGGAAGAAGATGGCGTCGGCGAATGATTCCCGGCAGTCCCAGAAGGACGCAGCCGACCAAAACTTCGACTACATGTTCAAGCTGCTGATCATCGGCAACAGCAGTGTGGGCAAGACCAGCTTCCTGTTCCGCTACGCCGACGACTCCTTCACCTCGGCCTTCGTCAGCACCGTGGGCATCGACTTCAAGGTCAAGACCGTCTACCGCAATGACAAGAGGGTCAAGCTGCAGATCTGGGACACCGCCGGACAGGAGAGGTACAGGACCATCACCACTGCCTACTACAGAGGAGCCATGGGCTTCCTGCTCATGTATGACATCACCAACCAGGACTCCTTCAACGCTGTGCAGGACTGGGCGACGCAGATAAAGACCTACTCGTGGGACAATGCCCAGGTCATCCTGGTCGGGAACAAGTGCGACCTGGAGGACGACCGCATCATCCCCACCGAGGACGGCCGCAGACTGGCGGACGAGCTGGGCTTCCAGTTCTTTGAGGCCAGCGCCAAGGACAACATCAACGTGAAGCAGGTGTTCGAGCGGCTGGTGGACATCATCTGCGAGAAGATGAATGAGAGCATGGACAACGACCCCCACCTCGTCAGCAACCACAAGAGTGCCACACTGCAGGAGAGCCCTCCCGCCAGCCAGGGCGGCTGCGGCTGCTAGAACCCCACCCCAGACACCCACCACCACTCCctcacccccccgcccctccgTCTTCCTCCCTCAACCCTTCCTTCCCACCCCACTGTCCTTCCCTCGTTGAGATCTCTGCTCCCACTGTCCTTACAGCTATTGTGTCGGCTTGATCCCACACCccaccttcctcctcctcctaccaGTCACCTGCCCCGCCCTCTCACCCAATTAGACCCGTCCCCAGCCTCACTCTTACTCTCTCACTGTCCCATCTCCCTGCTGTACCTACTCTTTGTCTCCTGATCCTTATCCTCCTAAACTACTCCCCAAATCCCTCTCTTCAGCCCCTCAATTACCACAAAATGAATATCACCCCTCAGCCGCCCCCACTGATACCTCATTCAGTTTCGATTGCAATGATCTGCGCATTGGCAGTAATTCACAATGGCAGGGAGTAATCGTGGGGCAGGGCGTGGGGGGGCTCTAACCAATCGTCAcactttaattacttaattgatcctTCAATTGATTAAGGAAAAAAGAATTTGCATGGAATGGAATGCTTTGATTCTCCTGAAAAACTGGACCCTCGATAAAATCCCATAcccactcactctctctcactctctcacacaaacacacccacaaacacacccacaatTATTTTGCCCCTGATCAGATTAGTCTGTTGTTTGCTTCGCCCCAGTCACTGTAGCGCTTTCCTCGGCATGTGCTCTGCGGACAGTGCTGCTTAAAGGGATGTGTggccattttaatgtttttatttttccagagctgaCCCTCACCTTGGCCCCGGCCATATTAGAACAAGCTGCCCTGACCGAGAGATGATACAATGCCAAGCAGTAAACGGAGCACACTCAAACACGCCTGTTCCTGGTAGCTTGTTCGTAGGCTAGGAGAATCTTGGGCGGGGCGGGGGTTGTCCTTTCAATGTAATGTGACTCTCTGTGGGATTAGATTCGAGCCCTATTACTCTTTATTAGCCCCCACCAAACCCACAAACTCCAAACTCTCCTCAGTGTATCACCATGTCCCCCCCCTCACCTTTCCTGCTGTGTCAGAGTTGAAAAGGGTTCCACAAAGAGAGCCCGCACTTTGCTCCCGACCCTGCACACCCCCCGGTCACGCTTGTTCTTTGGAATCGCTGAAAACACTGGAAAAGCGTCTGAAATCACTGCATCGCTACTATTGCACTACTACTGTATGGCCGTCCTATCGGAACCAGTTTGAAGCTTGTCCCCCCGTTCTCCCTTGAtaaaccccacccccccacagccACTCCCTGCATAGTGATTTCGATGTGTTGTCCCTGCGGTCACTGCCTTATTCCCCCCATGCTCTCCAGTCTGTTCTACTGCAcaatatctgtattattattactattattattggaGTTCTTAGTGCATTGGCCAGGAATTCACCCTCCTCAGAAAAATGCCAACGCTGTTGCTCTGCCTTAAACTTGTGTTGTTGACCATCTGACTGGCAGGGCTTCGCCAAGGGGTGTGGGCAAACAGTGTCAGTTTGTTAttcttcttttgtgtgtgtggggatcTGGCATGGGGGTAGCCCGCTCTAAAATGGGACTCTGTGGGTCGGTTGTGGAGAAGATGCTAGATTGAAGCTGTTGGGCATGCAGCACTGTAATGGGATTCATGTTGTTTGATGCGACTTGTCCTATAATTCCCCGACGTGCCAGTCACAACCCGATCGAAGCTGTATAGCGCCTTTCCCGTCCCGCTACATGCTTGTAGCGTCTGAGCGCTGTCTGCTGCTTGCCTCCAAGATGAGTTGTGTGTGAGCAcgtgttctctctctcacacacatacacgcccATGTAAACCCGTGTTTTTGTTTCCGTGGCTTTTAGGATCTCGATGTCGGTCTGCTTCTCACTGCAAAGTTCACACCTTGTCTCCTGTAGCGATTACTCAATATAGTGTCTGCTGCTTCCTTTGTCATTTCTTGGATCCTCTCCACACGGCTGGTACTGTATGAAAAGGCTTGCCTTAGGGGGGGGCGGGGAGGGAGTGCAATCgtgtcctcctctccttccccaGCCTCCAGTCTGTGAAGTTATCGTCCGTGCGTGAACATCGCCAGCTGTTTCCTgtcagtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtatgaggaAAGTGTCAGATTGCTTTATAAACCATCACTAATCAGGAAACCGTTCTGCCCGGGTACACAGACGTGGAGAGAGCGGCGTTGTCTTCACTGCACACAGAGCTTCTAGCAATTTCTGGAACGCAAAAGAAAGCTTGTCGGCAGAACATCTCCGGTCAGAGTGGGGTTGTTCAGGATTGCACTTTCTCACTGACAGTTCACGAGCAGTTTGGCGTTCTCTGTTCGTGCAGATTCAGTGATAGTGGCTTCATTGTGTTGGAATAACGTGACCCCGATCTTATATCTGCGCAAACTCTTCAGTCGGTTGCACTGATCTTAACCTCATCCCAAACAGCAGCCCAGAAATGAGGGGTTCTGTGATTGCAGCTCTGTATTGGAATATCAATCTTCTTAATCCTCGTTCTTGTACATTGTCGACAATATTAACCGACTGTGATAGTGTACTTCTTACTGGTCAGGTTGGGCAGACCTTTGGCAGTGGTGTGAGCTGCTGAGGGACATTGACTGGtcacagtgtgtgagtgttttacTGGGATTATCGCCCACAGCGTCTGCAGTTTCTCCACGGCTTTGTGAGATTGTGAATTCCTAGTCTGAGTTAAATGTCATTTATGAACACGATGGGGGTTGCAGGGAGGACatacacatgtgtgtgtatgtgagagagacTGTTGGATGCAGGTGTTTGGTCCTCAGGGATTTTAGTGCGTGACTGCAGTTAGATTTTTAGCCAATCCATTTGTGGTTTAATTGTACTGTTGGTGTTATTTTAACTTGATGGTTTGAACTCGCTGTTCCTAGACTTCTGTTCAGCCAAAAAGTGTCTTGGTACAACATCGCCTcccagtgcattctgggagcaCTGCAGCCTCCTGCTTCTCAGCTGGTTCCTGCAGGAGAAGGGCAGTGTCGTGGCTCCTGTTCAGTGTTTCAATGTTAAATTTCCTTAGCCAAGTGCTGCCCCTTGATTTTGTACCCAGGTCTTCTGAACCTGCTGTGCCCCCAAATACAGACCCGCTAGTTTCTGAAATCGTAAAGATACATGGATTGACACGCAGCATTTACcttctttcatgttttaacaCAGGTTTGCCAACCAGATGCCTGTGATCTTAACCCTTATTCTTAAGTGCCTGAAGGTCGTTAAAGCAGGGGATGAgacttgaatgtatttttattttattttattcatttttatgagTAATGGGGAGCAGCttttaatacacacatacacacacttatttGTGTAGTATTACACCTGTATCAAGTTgactactgaaatgttggtgAGATTTTAACTGAGGCCTTTTTAACTGTCCTCTTACTTCAAGAGGGAGAGAGCTACgtgtttttaaaagtgaaagtgCCAATTCAGAAGGCCTGGGACACACGGCCTATTTCCTGTGCGTTGACCTGTATCCGTTGGTGCCGTTTCTGACAGAGACTGCCGTTTGTGTGCTCAGTGACTGCTGCAGTGTTACCTTGCAAACCTGTGAATCGATCTGTGAAACGTTGCACTCCCATCCTACCTTGCTTCTGCTGCTAGAGGAACAGCAGCTTGCTGGAGGTCTCCCTGGCTCGCTCGCATGATGATCTCGCACTTGTGTTCTCCATATTCCACCCTGTGATTTTGCCACCCTTTTACTGAGCATTACTATACTGTGACAGTGAGAATACTACGCTTTCCCGTATGTTGTCTTAACGAGGAAGAGCCGCCTTGTGAGAGCATCAGCCGCAGCTGACCGTGGTATTGAGAAGGTCGAGTGCGGTAACGGACAGCCCGTGCTGAATCAAACGGTTGGAAAGCGGGGCCGGGGGGAGTGCAGTGAAAGGGGTTATTGCACGGCTCCGGTGTTTCAATCGCTGAcctgatttctgtttttctgcatACTGCCGTTTCAACAGTGGGGGTGGGCTGTATTTGTAACCTTGTGCAAACATACTGGATAGATACACTTTATGGTCCTATCTGAGATGCCTGTTGTTTACCGGCTCAGGCTGGATTTGGTGAAACAGATGGCAGGactgtttgtttagtttttttggttgaTTTGTCTTGAATTGAAAACCCCTCTCGGCCTTCTCCAAGCAAACCGGCCTGCCGAAAACGGAGGCTGGGAGAAGGTGTTGGCTGTACGATAGAAGGAGGTGCCTGTTTCCCAAGATCCTCCCTGTCCTAACGGTCTCCAGGTCTCCAGTGGATGCTCGTTCGCCGTGCTCTGGGCCtgggtgtattttttttttttttttttt

Function

NR:

description
PREDICTED: ras-related protein Rab-3D-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07884 RAB3D; Ras-related protein Rab-3D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008548 True 5366 mRNA 0.50 6 3789595 3809072

Neighbor

gene id symbol gene type direction distance location
AMCG00008539 NA coding upstream 3903 3783549 ~ 3785692 (+)
AMCG00008537 NA coding upstream 8568 3777492 ~ 3781027 (+)
AMCG00008538 NA coding upstream 18258 3758827 ~ 3771337 (+)
AMCG00008546 NA coding upstream 42787 3746220 ~ 3746808 (+)
AMCG00008541 NA coding upstream 43490 3745827 ~ 3746105 (+)
AMCG00008549 NA coding downstream 2513 3811585 ~ 3819176 (+)
AMCG00008550 znf653,LOC106601191,LOC106601361 coding downstream 14922 3823994 ~ 3834579 (+)
AMCG00008551 NA coding downstream 28061 3837133 ~ 3844620 (+)
AMCG00008552 NA coding downstream 47500 3856572 ~ 3861390 (+)
AMCG00008556 gcdh,LOC102794743,LOC100704678 coding downstream 124930 3934002 ~ 3939913 (+)
G49753 NA non-coding upstream 344468 3444002 ~ 3445127 (+)
G49754 NA non-coding upstream 345698 3414181 ~ 3443897 (+)
G49738 NA non-coding upstream 430066 3356699 ~ 3359529 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 747000 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 878656 2910694 ~ 2910939 (+)
G49914 NA non-coding downstream 154056 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 216029 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 225677 4034749 ~ 4035052 (+)
G50011 NA non-coding downstream 498754 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 653290 4462362 ~ 4468763 (+)
G49583 smarca4,LOC102779508 other upstream 900699 2886766 ~ 2888896 (+)
G49523 NA other upstream 1019551 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1578081 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1646201 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1681803 2088480 ~ 2107792 (+)
G49980 NA other downstream 347016 4156088 ~ 4160062 (+)
G49982 NA other downstream 352986 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 752919 4561991 ~ 4572874 (+)
G50215 NA other downstream 1786951 5596023 ~ 5596799 (+)
G50243 NA other downstream 1929469 5738541 ~ 5742750 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000333_00306908_00314083 RAB3D, RAB3DA, RAB3DB coding CI01000333 null 304944 ~ 315354 (+)