AMCG00008550 (znf653,LOC106601191,LOC106601361)


Basic Information

Item Value
gene id AMCG00008550
gene name znf653,LOC106601191,LOC106601361
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3823994 ~ 3834579 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008550
gaaaaaaagaaaacaacacacagctgTTGTCAAGATGGCGGAGATCAGTGCCGAAGAAGAGACGACTCTGGACCGGGAGCCCGTGGACCAGATATCGGCGATACTGCGGCGGTGTCGCGGCCGCCCACGCCTCACGGACACCGACCGGGCGAAGAGGCGGCTGGAGTCGCGGAAAAAGTACGACGTGAGGCGGGTCTACCTCGGGGAATCGCACCGGCTGTGGAGCGAGCTGAGGCGGCGCACCGGGCTGAGCGACGCGGCTCTCGCCGAGTACCTGATCCTGCTGGACTCCATCTACGGGGAGAGGTACCAGCACAAATACGCGGGGAAGAAGCTGACTGCGGAGTTTTGCATCAAGCCAAAAAGGGGGAGGAAGTGCAATGTGAACTGTCTGAGCAGCCTGGTGAGCTGGTACGAGGAGCACCGGCAATCCTGTCCACATGAGCCCCACCTGCACTCCCTGGAGCCGGTCCTGGGCTTCTCCACCACGGCCGTGTGGCAGTGCCAGGCCGGCCACGGCTTCCTGCAGCACCTGGTCTCGCCCAGCAAGGACGCCAGTGAGTCGGAGAACGAGAACGAAAATGAGCCCGAGTCGGAGCTGGACCTGTCCCCCGGGGCCAGGGAGACGCACTGCACTCGGAGGAAAGCGGCCGTTGCTACCCGGCGCCGGCAGGGTAAATACCACGGAGAACGGGTCGAACTGCAGAAGCCAGGCCCGGTTCCCGTCCGTTGCCGTAGACAGGTGATGGAAACGGTGCAGGAGTCAGAGGCTGTGAGCAGTGGGCACTGCGAGCCGGCGGTCCCAGAGCCTGGACTCACCCTCCCGGGCCAGGATGCCAAGGAAGGGCAGGCAGACGCTCCCGACCAGGCCGAGGCGCAGTCCCCCTCCAGGCCCCTGTGGGACATGGAGGTGGTTTTGGAGGAGGAGCACGCGCTGGAGGGGGACAAGGGGGACGGGTCCTCGGCTGCTACAGAAAACGGAGAGGGGACCACTGGGCCACTGAATGAAGAGGCGTGTCCCTCTGACCTTGACACCCAGAAAGCAGGGCAGGCTTCTAGGTCCCAGAAACAGGGCCCGGTTGTGCGAGTGGTCCACAATAAGCAGATGGTCCACACCAGCCTGGAGGAGGGGAGCCCGGGGGACCCCTCGGAGGAGAAGAAAGGGCACAGCTCGATGCACAGGAGCAAGAGGAGCCGGCGGGGCCCCGTGATCGAGGCGGATGGCATGCTGAAGATGTTTCACTGTCCCTACGAAGGCTGCAGCCAGGTGTACGTGGCCATCAGCAGCTTCCAGGTGAGCGGTCAGCGTGGCGCTCTCGTGCCGCTCCTCGCGGTCACCGTTAACCATGTCAACCTGGTGCACAGGAAGGGCCGGACGAAAGTGTGCCCCCACCCGGGCTGCGGGAAGAAATTCTACCTCTCCAACCACCTGCACAGACACATGATCATCCACTCAGCCTGTGTTGTGGATCACCCACCCACAGGTGTGCGAGACTTCATCTGCGAGACGTGCGGCAAATCATTCAAGCGCAAGAACCACTTGGAGGTGCACCGGCGCACACACACCGGGGAGACGCCGCTGCAGTGTGAGATCTGCGGGTACCAGTGCCGGCAGCGGGCGTCTCTGAACTGGCACATGAAGAAGCACACCCCCGAGGTGCAGTACAACTTCACCTGCGAACACTGCGGGAAGAGGTTCGAGAAGCTGGAGAGCGTCAAGTTCCACAAGCTGAAGAGCCACCCCGAGAAGCAGGCGgcgtgagagcgagagagaccgCTGCTCCGGGAGATGGCCTGGATCCGGGCTTCTGTGACGAGAGCACATTCCCaagcctctctctcacacgACCAACAGCTGAGGCACCAGACGGGAGCCACTGTGTGGGGTGCTGCCAGGAAGTGGGGAAGCTCCTTGGGTGTCTTCTCCAAACAACAAACTTGAcctcctgtttttcttcttccctttGGATTCTGTCTATcccgcccccacccccagaTCTCCTATTCTCCTATCTCGTTCCTCGGACACCCCCAGTCTAGTTCATATCGTAGCTTCATTGTAAGTCTCCTAGTCTCCAAAGACGCAGATCAATCAGGGCTTGATGAATGGAGGGCTGTGACAGGGAGTGCTCTTTGGAAAGGCTTGTTCCCCCACGATCTCTATTACGACCCAGACACTTTGCTAGAGAAGGGCCTGCAGTGCTCCCGAGGCTTTATAGATGGTTGACCTGTGTGGATCTCTCCCTAAGCTGGACTCTTCCCCCTCCCTGCCCAGTAATCTCATCTGCACCGTCCTCCTGAGGGCATTTCTTGGCCCTGGATCAGTTCTTTTGAACCTTTGGGAACAAACCTGCCTCCTACATCCCTCTGTCGGCTCCCCATCCCAATCAGACTGCCTTTCCCTGCTGATTCGGGAGCAGTTTCGATGTGGAGCTGCAGGGGGCGCTGCTTATACTTTTCCAGCATTATCTCCCAGGAtttggatttagttttttcccaaATTGAAACAATCCCCTGCCCCCCAACTAAATAATTCCTTTAGGGGGGTGTGAGTACTTCAGTTCACAACCAAGACCAAGTCCCAAGATCATCCTATTTCGACCTtcaataaggaaaacaaaaaacggcTCGGGATATCTGGGTGGATATTTAAAATCGGTGTCCCACCCTTTCCCTCCTGCTCTGCTGCATCATTCTTCCACACGCAGGATGGGGGCGGCGGAAGGTTTGTTTCATCCACAGACTACCTGGtttcaattaaaccatttcGGACATTCCACTCGTTTGAGGTTTGTATTTGATGTGACCTCCTGCCCCACAGTTTAAACAGACCCATGTTTCATGTGGGCTAGGAGTATTGCCCGAAGAGCCCTGAATTCTCTGCTGGTCTAATGAGTGTGTTGGCCACACGCACACACGGCTGAAATAGTGATACAGCGAAGGATGATCAGTCTCTTCCTTCTGGCTTTTTTCGATGTCACTTTTTCATACTGATGCAGGGACTGACACTGAACTCCCGTTTACACGCCAGCTTGAGACATTGCAGGTTTTCCCCAACTAGGATTTTTACATAGACATTACGCCACACCTTACCTTATCCCggctaaatgtgtatataagcctctgttttttgttttgtttttgtttttgttttgtctgtgcaATCTGGATAACTGCCAGGCACTCTGAAACCCTGAAACGGATCCCGCTGCTGAGCAATGGGTGTCCTTTGTCATCCTTGCTGAGGAACAATAATGCGCACTTTAATGTGGAGGTTGTATAGACATTGTTTCTGACACTTCACGGTATTTAAAAGGAAgaataacaaaactgaaatatctatGGCTTTCACCCACAGCGGTGACTTTTGCGTATCGATGGGGAGCTTGAGGTATGATTGTGGGTGCTGTGTCTGTTTGGTGTGATTATGACGGCAGGATGAAGAGGATCTGCTAGAAGAGTTGGGGGCATTCCCACAGCAATTCAGATAAGGATGGAAAAGGCTGTGCATGGAGAACAAGGGCGGGACATTCGTCTCGGGACGGCCGAGTCCGGCCAGCTGGTTAAACCAAACcttgtgtcagtgtctgtgaaatgaaaaacaagaaaaaagtgtGTTGCTTTTTTGGCTGAAAGTGGTTTGTGTTCCTCTGAGATTATAATGCACTAACTGAACACTGTAATGTGACAGACCTCTGTTTACTGTATTATAGAAATgctaaatatgtaaaatatgtgaatataaattcaaatgtatagaGAATCCCCCCAGACTCAAGAAAGCCAGTTTGGGTCTTGAACAATAAAACGAGGTTTC

Function

symbol description
znf653 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF653 (zinc finger protein 653).

NR:

description
PREDICTED: zinc finger protein 653

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008550 True 3817 mRNA 0.55 10 3823994 3834579

Neighbor

gene id symbol gene type direction distance location
AMCG00008549 NA coding upstream 4818 3811585 ~ 3819176 (+)
AMCG00008548 LOC106601364,LOC106601190 coding upstream 14922 3789595 ~ 3809072 (+)
AMCG00008539 NA coding upstream 38302 3783549 ~ 3785692 (+)
AMCG00008537 NA coding upstream 42967 3777492 ~ 3781027 (+)
AMCG00008538 NA coding upstream 52657 3758827 ~ 3771337 (+)
AMCG00008551 NA coding downstream 2554 3837133 ~ 3844620 (+)
AMCG00008552 NA coding downstream 21993 3856572 ~ 3861390 (+)
AMCG00008556 gcdh,LOC102794743,LOC100704678 coding downstream 99423 3934002 ~ 3939913 (+)
AMCG00008555 NA coding downstream 122962 3957541 ~ 3961050 (+)
AMCG00008560 NA coding downstream 174619 4009198 ~ 4010145 (+)
G49753 NA non-coding upstream 378867 3444002 ~ 3445127 (+)
G49754 NA non-coding upstream 380097 3414181 ~ 3443897 (+)
G49738 NA non-coding upstream 464465 3356699 ~ 3359529 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 781399 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 913055 2910694 ~ 2910939 (+)
G49914 NA non-coding downstream 128549 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 190522 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 200170 4034749 ~ 4035052 (+)
G50011 NA non-coding downstream 473247 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 627783 4462362 ~ 4468763 (+)
G49583 smarca4,LOC102779508 other upstream 935098 2886766 ~ 2888896 (+)
G49523 NA other upstream 1053950 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1612480 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1680600 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1716202 2088480 ~ 2107792 (+)
G49980 NA other downstream 321509 4156088 ~ 4160062 (+)
G49982 NA other downstream 327479 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 727412 4561991 ~ 4572874 (+)
G50215 NA other downstream 1761444 5596023 ~ 5596799 (+)
G50243 NA other downstream 1903962 5738541 ~ 5742750 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000333_00334181_00348391 ZNF653 coding CI01000333 null 334181 ~ 348443 (+)