AMCG00008551


Basic Information

Item Value
gene id AMCG00008551
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3837133 ~ 3844620 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008551
CAGTGACCCAGCACTACAATCACATCACTCCGCCCCCTCCCCACCCAGAACCACCAACCTGTTTTAGAGGTGCAGGTCTCGtccagagagcgagagagagcgagagagaacgAGACGGACACCAGGGAATCCTACACTCTCAACAACAGCGCAGTTCCCATCCTGTGCCATACCGCACCTGAATCAAGGTGtggctgtactgtgctgtactgcgcCGTGACTCTACactactctCTGGCGGGCGCTGCCATCCTGGGCGTGGGCGTGTGGGTGAAGGTGGACAGCAGCTCCCTGGGGGGGTTGCTGCAGAAGCTGGGCCAAGGGGGCGGCGTGGCGAGCCAGCTGCTCAACGTGGGCTACCTGCTGATCGCCGTGGGGGCCGTGCTGCTGGTCATGGGTTTCCTGGGCTGCTGCGGGGCCATCCGTGAGAGCCAGTGCATGCTGCTGCTGTTCTTCATCATAGTGCTGATCGTCTTCATCGCCGAGGTGGCTGGGGCCGTGGTGGTCCTTGCCTTCTCCTCCGTGGCGAGGGATCTGATTCAGAAGCTGGGCGATGAAGCAGTGAAGAACATTAAGCAAGATTACGGCAAAAACAGCGAAGTCACCACCTTGTGGAATGAAACTATGACTAAGTTAAAGTGCTGTGGATTCTATAACTACACAGACTTCACTGACTCCCAGTTTGTGAACACCACCCAGCGCTATCCGACTCCCTGCTGCAAGAACAGCACCTGTACTTATAACAACGCCACTGTCTCGgACGTGAGCGGATGTCTCAACTCCTTGGTGACCTTCATCAAGGACAACTCGGTGGTCTTGGGGGCCGTCGGTCTGGGTATCGCTGTCTTGGAGATCGCTGCGATGGCGTCTTCCATGACCATGTACTGCAAGATCTCTTCAAAGTAACGGCCGGCCGGAGACGGACATCCTCATCACTCAGGACCTCTCCATTCCTCTTAGCAAGCTGGCGGAGAAGACTTTGAGTGAAATATCTGCATGAAGCTCAGCAGGCTAAGAGGAAATTGCCACACTCCTCCTCACCCCTGAAggatgtctgtttttattttatgtataatgaTCACTAACAAAATGTGTTGCACATGCCTAAACGAAAAAACGCTCTGCTCTGCTTCCTCTGGCTGCAGTGTCGGCCTCACTGACTCAGGGACGGGAATCAGATGCCCATTGCATAGTGCCGATCCACGCAGGCTTTACTGCAAACCGCACACTCTAGTGTAGTCAGTACAGCAGGTCAACCAATACAGTACTGTCAGTCTTTTATTGGAGTGATTGTTTATTGATTGTGACTTAAATGATTGATGTTTAGTGTCCTCCAGATCTCTCCTTAAACTGACTTTCACTGAGACTTGCATGGCCCCCGCGTCACAAACTCTACTTCATCGTCTTTAGAGGGAATTCCTTCAGCTTGTTATATGAGCTGTGCTTCTGTAATGCACGCGCACACGTATAGATATATAGATTCATGTTTCATTGCTACACAAATGATACTGTTCTGAAATTACAAGCTTCTCAGAGAATGTGGGATAATAcgaattgtgtttttctgtatttttattaagtCCAACAGGTTTTTTACATTCTTGGTTATTTGAGGTCGTATCGAATGCAGCTGAATGCTTCCTTTTACtttatacagaaacaatgaaccAACATCTCCACATTTACTGGAagtgtatttgtaaaatgtcaaataaaaccGAATGTTTAACTTT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17353 TSPAN18; tetraspanin-18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008551 True 1733 mRNA 0.50 8 3837133 3844620

Neighbor

gene id symbol gene type direction distance location
AMCG00008550 znf653,LOC106601191,LOC106601361 coding upstream 2554 3823994 ~ 3834579 (+)
AMCG00008549 NA coding upstream 17957 3811585 ~ 3819176 (+)
AMCG00008548 LOC106601364,LOC106601190 coding upstream 28061 3789595 ~ 3809072 (+)
AMCG00008539 NA coding upstream 51441 3783549 ~ 3785692 (+)
AMCG00008537 NA coding upstream 56106 3777492 ~ 3781027 (+)
AMCG00008552 NA coding downstream 11952 3856572 ~ 3861390 (+)
AMCG00008556 gcdh,LOC102794743,LOC100704678 coding downstream 89382 3934002 ~ 3939913 (+)
AMCG00008555 NA coding downstream 112921 3957541 ~ 3961050 (+)
AMCG00008560 NA coding downstream 164578 4009198 ~ 4010145 (+)
AMCG00008559 NA coding downstream 177905 4022525 ~ 4023493 (+)
G49753 NA non-coding upstream 392006 3444002 ~ 3445127 (+)
G49754 NA non-coding upstream 393236 3414181 ~ 3443897 (+)
G49738 NA non-coding upstream 477604 3356699 ~ 3359529 (+)
G49636 LOC106607037,LOC105028343,LOC103364966,LOC106607038 non-coding upstream 794538 3027978 ~ 3042595 (+)
G49599 NA non-coding upstream 926194 2910694 ~ 2910939 (+)
G49914 NA non-coding downstream 118508 3963128 ~ 3964014 (+)
G49938 NA non-coding downstream 180481 4025101 ~ 4026246 (+)
G49944 NA non-coding downstream 190129 4034749 ~ 4035052 (+)
G50011 NA non-coding downstream 463206 4307826 ~ 4308836 (+)
G50055 NA non-coding downstream 617742 4462362 ~ 4468763 (+)
G49583 smarca4,LOC102779508 other upstream 948237 2886766 ~ 2888896 (+)
G49523 NA other upstream 1067089 2765879 ~ 2770044 (+)
G49340 cdc37 other upstream 1625619 2209483 ~ 2211514 (+)
AMCG00008476 NA other upstream 1693739 2127715 ~ 2143394 (+)
AMCG00008475 NA other upstream 1729341 2088480 ~ 2107792 (+)
G49980 NA other downstream 311468 4156088 ~ 4160062 (+)
G49982 NA other downstream 317438 4162058 ~ 4165483 (+)
AMCG00008580 pnpla6,LOC106564686 other downstream 717371 4561991 ~ 4572874 (+)
G50215 NA other downstream 1751403 5596023 ~ 5596799 (+)
G50243 NA other downstream 1893921 5738541 ~ 5742750 (+)

Expression


Co-expression Network