AMCG00008557


Basic Information

Item Value
gene id AMCG00008557
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3942168 ~ 3946340 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008557
CGTCACGCATGCGCACGCAAATAACTGTTTACTCTGTTTAAACAttggatgttgttgttttcttatggAAAGTTCCTAGAAAATTACCTTAGAAGAGCAAAGAAGCAGCTCGGATACTGGTTTCTGCGTTTCTAGgtcaaaggtcatccAGAGGTGAGAGGAACACGCGTCATAGAGCTGTGACGGCCCAGCCCAGCAGGGAGGGAAATGGACACGTTTTTATTTGGGAAAAGTGCCTCTGACTCGCCCAGCACCTCAAAACAAAGTGATCAAACGCAAGGACAGGGATTGGATGAAGGATTTGGCACAGACAGTCACACCCCTGCAGAGGGTTCCACATTTATAAGCATGGATGAGGGTCTCAAGCAGCAGACCAGCGAGCCACCGGATTTTGAAGCCTCCAGCAGCGATGCGGAGCAGCCCCCTAATGAGCCCTCGATGTACGTCTCTCCTGTGGATTCGAGAATGGAAGAGATAGGGAAAAAAGCTCAGGACCTGATCGAAAAGATCTACGAGAACCGTAGAGTGGGTGAAGATTGTATGAGCAGCTTCCAGGACCAGCTTATGACGAAGGTGAAAGACTTATGTCGCCAGGTGAACGAGCACATGTTTGCAGTGTATGAGGAGAACAGCAAGCTGATAGAAGAGAAGCTGCAGGAGCTGTCAGAGGTCTTACAGAGGTGCAGCCTGTTGAATGCAGACCTCCAGAGAGCCAGCCAGACCCTGGTGGCCATCAACAAGGGCCTGTATGACCAGCCAGAGCTGTGACGTGCTCCCCAGGGCCTGCCGATTACAGCAGCACGTGTTTGGGAGAGGGCACAACCAATCTCCTTCTCCAGAGCTGAAGAAAAGCCCAATCTGACATCAGGAAGGGACCAGACAGGGGTCAGCACTGGTCTTACAGAGCAGGCAAACATCCAGACCAGTCGATTTCTCTTCCTTTTAAGACCATGTGCACAGGAAGACATGCTGTACGACTCTCTTTTGGTCATAGTTCTGTTATGTTCTTACAAGGTTACATTCAAGCTTTTGAGTTAGGCGTAACGAGCCCTCACTCTTCTGTAAACATTATTTCGTGAAACCTCTGTGGCTCGTTTTCCTTTCAACAAGGGAGgcagattataaaaataacatgttagcaggaggtttatttatttattgtattcccCCGTTACGAAAGGTGATGCTAAACAGACGGGGCTgagcacacaaataaataagtccATTCCTGCTACTGTTGCATATTCTGTATTGCCAAATTGGGAACTGCAGTGTGGCAGGAATATCAACAAGGCCGATCTGTTTGTCCTATGAGTTCAGTGTGgcatcattttttcatttgtcaaATAACCTTCGGCttaacctttctttaaaacGATGGCTACTttccatatttcattttttttttcttctcttctggTGAGTAGATTATTTCGTCTGTCTGTTTGTTGCTCCTAGATTtaattcactttgtttttttatttatattttatatatagatgaATGATTGCCTCTTCAGTTCTCTGAAAAGATGCGAGAACAAAAGACGCGTCTCATTCTAGGCCCAGTGCCAGCCGAAAAACTCGAAGGTAtccacatacaaatacaaagacaCGCTCTGTCTCGATACAGCCCGGTTTGAGCCACGAAGCTTGGCGTGACTCATCGTCTTGTATACAATTGAAACCAGGACAGATAAAGATTTATGTGTCagcattcaaatgttttctgtagaaaATGTGTTGTTCTGCTTGTTACAGTTCTTatctgaatatttttaaatcggTCGTTGAGTTGGGCACCACTCCAGCAGCTGTGCTTCAGATGATCAAAGTGTACATGTTTGAACGTGCCAATCTTCTCTGCTAATAAAAGCACGATGCACTGTTACAGTAGAATA

Function

GO: NA

KEGG:

id description
K19535 SYCE2; synaptonemal complex central element protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008557 True 1900 mRNA 0.45 5 3942168 3946340

Neighbor

gene id symbol gene type direction distance location
AMCG00008558 NA coding downstream 30084 3890918 ~ 3912084 (-)
AMCG00008553 NA coding downstream 119753 3820015 ~ 3822415 (-)
AMCG00008535 NA coding downstream 317076 3618649 ~ 3625092 (-)
AMCG00008536 NA coding downstream 330904 3600768 ~ 3611264 (-)
AMCG00008532 LOC106569090,LOC105012159,LOC107599908 coding downstream 384326 3554539 ~ 3557842 (-)
AMCG00008563 farsa,LOC107679365 coding upstream 23006 3969346 ~ 3980969 (-)
AMCG00008561 NA coding upstream 36436 3982776 ~ 3995553 (-)
AMCG00008562 NA coding upstream 51461 3997801 ~ 4017824 (-)
AMCG00008566 ilf3 coding upstream 122748 4069088 ~ 4091769 (-)
AMCG00008567 NA coding upstream 158403 4104743 ~ 4108013 (-)
G49863 NA non-coding downstream 132906 3723229 ~ 3809262 (-)
G49871 NA non-coding downstream 161064 3779775 ~ 3781104 (-)
G49860 NA non-coding downstream 206691 3720969 ~ 3735477 (-)
G49858 NA non-coding downstream 248907 3691380 ~ 3693261 (-)
G49811 NA non-coding downstream 498259 3414181 ~ 3443909 (-)
G49984 NA non-coding upstream 215835 4162175 ~ 4163650 (-)
G50020 NA non-coding upstream 372443 4318783 ~ 4321888 (-)
G50126 NA non-coding upstream 873900 4820240 ~ 4829621 (-)
G50268 NA non-coding upstream 1994855 5941195 ~ 5941527 (-)
G50337 LOC104962440 non-coding upstream 2396336 6342676 ~ 6342964 (-)
AMCG00008554 NA other downstream 70899 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other downstream 164814 3769684 ~ 3777354 (-)
G49605 NA other downstream 1033503 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 1239746 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 1857143 2073783 ~ 2085025 (-)
AMCG00008602 NA other upstream 1640735 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 1709349 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 1802550 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 1840280 5786620 ~ 5793995 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 2892737 6839077 ~ 6885687 (-)

Expression


Co-expression Network