AMCG00008561


Basic Information

Item Value
gene id AMCG00008561
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3982776 ~ 3995553 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008561
cGATTACCCAATAGGACAACCGATCAGCAATTTGGAGCCTGATCAGTGGCCTATCAGGGGCCACAGGGGCTGTGTGTCAGCCACTTTGTAGCCGGGTCAGGCCGGTTACACTAACAACAGAGAAACAAGTTTTTACGGGGGGACCGACGAGCACTTTTACGCGTGAGGCGCACAGTTTTATGAGGGAATGAATCTGCTGCGGAGGGGGTGTTTGTAACGGGCATGTGCACCAAAATACTTcagacgttttttttttgttctttgttttctgtacaaaACCGAGGGACGGTTACCATTTTCGATTTGGTTTACTTGCACATTTACACGCGTGTGGCTGGTAAAATCCGCGATACGGGAGCGCAGCTGTAATCCgattgtttgttctgttttgctgTGTTGATCAAGCATATAATCCATCTCCCGTCCGCTGTTTGTTACAGTTGCTGCTGTGAATCACTTTCACCCCCCTGCACACGTGGAGTCGGGGGTTGTCGCCTtttaaactttttcttttctcgAAATGATCAAATTTAAGCTCTACACTTTCCGTCAGCGGATAGGCAGGGGGTAACAATAATAGCAACTCGGGGGTGGCTGGGTGTTGGCGGTTTGACTTTTGCTATAGAAAAGCAAATGATGAAGGTAACCCGACAATAACAACGCNNNNNNNNNNAATCAGTGTAGTATTTGATGATCCGGATCCAACAAAGTGACTCGACTGCTTCAGGAAGACCTTCGCACTGATTAAAGATGGACCTGCCTACACTTCTGCTTTCAGTGTTGCTGTCTGCAGTTCCCTGGTCCTCCTGCTACCCCTACATGGACCAAGACCACCATGACCCTAACAAGACTGCCATCCGGTTCATTGCACTTGGGGACTGGGGGGGGCTGCCCTTCCCTCCCTACATGACACCTATCGAGAAGACAACCGCCCACGAGATGGGCAAGGTGGCTGACAAAATGGGTGCCGATTTCATCCTGGCGCTGGGAGACAACTTTTACTACCATGGTGTGGACAATGTGCACGACCCCAGGTTCCAGGAGACCTTTGAGCGGGTCTTCACAGCGGACTCCCTGGAGGATGTGCCCTGGTACGTCATCGCTGGCAACCATGATCACATTGGCAATGTGGAGGCCCAGATCCAATACAGCCAGTTCTCCAAAAGATGGCACTTCCCTTATTACTACTATGAGCTGAACTTCCGGGTGCCCAAAACCAACACCAAGTTGACGATCCTCATGGTGGACACCATACTGCTCTGTGGGAACTCCGACGACCACCTCGACGAGAAGCCCCGGGGTCCTGTCGATTCCGTCCAGGCCAATCGGCAGCTGCAGTGGCTGACCCAGCGCATGGAGAACTCCCAGGCTGACTTCCTGCTGGTGGCCGGCCACTACCCCGTGTGGTCGGTGGCCAAGCACGGGCCCACAGAGTGCCTGCTGGAAAAACTGCGCCCCTTGCTGCTCAAGTACAAAGCCACGGCCTACCTCTGTGGCCATGACCACAACCTTCAGTATCTGGAGGAATCCGGTGTGGGGTATGTGGTCAGTGGAGCGGGCAACTTTCTGGAGAACATCCAGGAACACAGGAAGTCTGTCCCTAATGGTTCCCTCAAGTTCTTCTCCGGCCAATCCAGCACCCTGGGCGGCTTTGCACATGTGGAGGTCACCAATACCCAAATGACCATAACCTTCATCCAGGCCAGGGGGACATCCCTGTATCGCACTGTGCTCCCTCGCCGCACTGCCCCCTAAAGTCAGGAGGACCACAAAGTGCCCTTCACACAATGCCTATTGACTTCTGTCtcttattagttttatttttgcctttaaATTGCATCCTTATCTTCATTAAGTATAGATAATTGACTTGTACACACGTACCATTTACTTCTGTTGTAGGGGGCTCTATGATCTTAAGATTCGCACATTTTCACAAATTTGATGAGCTCTTGAAAGACTagttgaaatgtaatgtttaccAGCTGCTATTCTGCCTCATTAAGGCTGTGCTGATGGTGATCCTGTATTGATTTATGCAGTGAATAATTCTTCAATTAAGGAAAATAGTTCTTGGTATGTTTCAGTATTGATGGCAGGTACATCACTAAAAAgaacaaatgacaaattaagCAAAGAATGGCTTTAATGTTTCTCTTCAGACTTTCTGGCTGTGAATTTTTAATCCCCAGTCCACTGTAATTTACCTCAGTGCAGTCTCAATGCAACATCTAAAGATCAGTGCATTTCCCCAATCAGCCATCACCCAATCAGAACAACTCTCAGTCTTAGATTGTGTTCACCACAATCTGCCCGTGTCGCAGTGCTTGTTTTGAATTCCAGATGCAATGATCTGGAACGAGATCTGTAGTCTTCTGCCAGGTTTTGTTGTCAATACATCTGTTTAAATCATGGAAATGGTTAACAGGAGATTAACAGTTCAAATACTTTGACACTGATGTCTTTGTAAGCATGTTTGCAAGAATTCTGTATTCTAGAATTTGCCattgttaacatttaatttggcCAGATCTAATGTTGCCATGCCcgtttgatttgtgtgtttaaaatagttgtattaaaaaaaagaggaaaaaggttttactttgattttaagttttaaaacataattttaagtgtttgtattagtgtgcatatttgtttgtatgcaagaaaatataatgataCCCATACTTTGTGCCAAGTTTTGCTGTTGTTCATTATATAATGCttcaaaaaacatgttttactttcAGGCACATCTGAAAgtatatagttaattaaaaaaacctaATGGGACAGAGccaacaattttatttttggaaattgATTTACAATAAAGAGATGGGCTGTAGGATTTTATCAGGAACACAAAATCAAGGAATGAGAAATTTTACAATCATACAACAATTTCCTTCAGGTACATGTTTTTCTCCTTGGTAAGGTGGCTTATAGTTTGGGGTCACTATGGTgcttaaatgtatagttttggGACAGAGAATACAAATTTCCCAGATTGCTTTGCTCTCTCCCATActtgtttcttctgttttgtgTCAATAAGTGATTGATTTTGACAACGTAGCACACTCGAACTGGTCAAAATCATGTTTCCTGTATCAGAATAAATCACCCTTTGGACTTGCATAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0003993 acid phosphatase activity molecular_function

KEGG:

id description
K14379 ACP5; tartrate-resistant acid phosphatase type 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008561 True 3150 mRNA 0.45 6 3982776 3995553

Neighbor

gene id symbol gene type direction distance location
AMCG00008563 farsa,LOC107679365 coding downstream 1807 3969346 ~ 3980969 (-)
AMCG00008557 NA coding downstream 36436 3942168 ~ 3946340 (-)
AMCG00008558 NA coding downstream 70692 3890918 ~ 3912084 (-)
AMCG00008553 NA coding downstream 160361 3820015 ~ 3822415 (-)
AMCG00008535 NA coding downstream 357684 3618649 ~ 3625092 (-)
AMCG00008562 NA coding upstream 2248 3997801 ~ 4017824 (-)
AMCG00008566 ilf3 coding upstream 73535 4069088 ~ 4091769 (-)
AMCG00008567 NA coding upstream 109190 4104743 ~ 4108013 (-)
AMCG00008568 NA coding upstream 112466 4108019 ~ 4114644 (-)
AMCG00008565 NA coding upstream 140579 4136132 ~ 4137118 (-)
G49863 NA non-coding downstream 173514 3723229 ~ 3809262 (-)
G49871 NA non-coding downstream 201672 3779775 ~ 3781104 (-)
G49860 NA non-coding downstream 247299 3720969 ~ 3735477 (-)
G49858 NA non-coding downstream 289515 3691380 ~ 3693261 (-)
G49811 NA non-coding downstream 538867 3414181 ~ 3443909 (-)
G49984 NA non-coding upstream 166622 4162175 ~ 4163650 (-)
G50020 NA non-coding upstream 323230 4318783 ~ 4321888 (-)
G50126 NA non-coding upstream 824687 4820240 ~ 4829621 (-)
G50268 NA non-coding upstream 1945642 5941195 ~ 5941527 (-)
G50337 LOC104962440 non-coding upstream 2347123 6342676 ~ 6342964 (-)
AMCG00008554 NA other downstream 111507 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other downstream 205422 3769684 ~ 3777354 (-)
G49605 NA other downstream 1074111 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 1280354 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 1897751 2073783 ~ 2085025 (-)
AMCG00008602 NA other upstream 1591522 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 1660136 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 1753337 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 1791067 5786620 ~ 5793995 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 2843524 6839077 ~ 6885687 (-)

Expression


Co-expression Network