AMCG00008572


Basic Information

Item Value
gene id AMCG00008572
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4353825 ~ 4362275 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008572
ggggagagagacgaCAGGAAAGGAGAgacaaggagagaaagagagagaggtgttgTGCAATTTTGGAGCTAACGCTTTGTCAACCTGAACATGAAACCGGGATTGGAGTGCTATGCATTAGCCGACTCTGCCAGCACCAAATGGGGATGTCTGGTGcccattgagagagagaaagtcacGGATATGCTGAAGGACCTCAGAGCTATTGACTTGCACGATGGCCCATTGCGTGAGTGCCACCCATTGGAGTGCGACATGGCTTACCTCCATGTGAACCCAACCCCTAAGCCCATCCTTCTCTCCCCTAGCCTGGGCCCCAACTCCAGCTACATCTCCCCTGCACCCAGCTTCCTAAACAGAAGTCATCCAGGAAGCCTCTTTAATCTGGCCATGCCCTGCTTCAGCATGACCCTGGGCTGCATCTCCAACATCCTGGCTCTAACCATCCTCTTCAAGTCCTACTCCCGTTTCCGCCGACGCTCAAAAGCCACTTTCTTTCTCCTGGCCGGGGCACTCCTGCTGACTGATCTGTCTGGCCACATCATCCTTGGAGCCTTTGCTCTCCGGCTGTACCTGTCCATCCTATGGAAGGACTATGCTGATCACTCTGAAGTCTTCTGCCAGGTGTTTGGGGCCTGCATGGTGTTCTTCGGCCTGTGCCCCCTCTTCCTGGGCAGCGCCATGGCTGTGGAGCGCTGCGTGGGCGTCACCAGGCCCCTGCTTCACTCCACCACGATCACGGCCACCCACGCCAAGCTGGCAGTGGCCCTCCTCTTCTCCCTGTCCATCCTCCTGGCCACCCTGCCCTTAACCCAAGTGGGCAGCTACGTGCGCCAGTTCCCAGACACTTGGTGCTTCCTGCAGATCCATGATGGGCTCTCCAAAGCTAACCAGGGCCTCACCCTGGCCTTCACCAGCCTGGGCCTTGCCTCACTGGGCCTCTCCCTGCTCTGTAACTGCCTGAGCGGGATGGCTCTGCTGCAGGCCAGGCTGCGTGGACGATCCAAGGCCAAATCCAAGCCCAAGACCCCTGGAGTCCCTCAACGCAAATCTGCTCCATCCCATGATATTTGTATCTCCCTGTCGGTCAGCATGTCCTGGGGCTCCTCGGGGTATGACGTGCAGCAATACAAGAGGCTGGTGTTCATCGGGCTCCGACTGGCCTCTTGGAACCAGATCCTGGATCCCTGGGTGTACATCTTGCTGAGGCGGGCCGTGCTGAGGAGGCTGTATGGAGTAATGCAGCCCCACCGGCAGCTCACGCAGAGCTCtttcaggaccatggacagaGAGCCGCAGTCCTTCTCCCGGCACTGACCAGCACTGTCTCCGCATGCCTCTCTCCAACCCCCATCCCAACAATCCTCACCTGGATGTTTCATTGGGTACATATCGAGCTGCTGTTGCACCAACCGCAGGATCTGAGCTGTCAATGTGCGAAACACCGGAGGACCAACCGATTAGGTTTCAAGCACCTGAGACGTTCCCTCCATTCGCTTTAGCTATGaggctttcattttttaatggatAAAGGTTATCTAATATCACACTGAAGCACACATTGTGATACACTGAgacccaaaataataataaaaagttgtgttttttgtttttaaaacttatttCAGCAACCATACGAAACCAAACAGCAATGCAAGAACATTATTCTACTTCAGTCCTTAATAAGCTAcaaaaaatatctgtattgttaatgtaattatgGCTATTGTGCTGGTAAAGTTGTGTTTTCCTTCTTGGCAACGCGTCTTCTGGATTTGcaagatgtttttaaagtgtcatgaatgtaaattaactggttgaataaaataaaggctACAGAAGCATTACCGgtt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0004957 prostaglandin E receptor activity molecular_function
GO:0004958 prostaglandin F receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008572 True 1853 mRNA 0.53 4 4353825 4362275

Neighbor

gene id symbol gene type direction distance location
AMCG00008574 NA coding downstream 735 4335677 ~ 4353090 (-)
AMCG00008577 NA coding downstream 20925 4329574 ~ 4332900 (-)
AMCG00008575 NA coding downstream 35512 4310994 ~ 4318313 (-)
AMCG00008576 LOC107570893 coding downstream 61547 4282719 ~ 4292278 (-)
AMCG00008573 NA coding downstream 73273 4279153 ~ 4280552 (-)
AMCG00008578 NA coding upstream 15809 4378084 ~ 4400390 (-)
AMCG00008581 pnpla6,LOC108258612 coding upstream 153497 4515772 ~ 4560370 (-)
AMCG00008586 NA coding upstream 254540 4616815 ~ 4621744 (-)
AMCG00008584 NA coding upstream 259577 4621852 ~ 4643616 (-)
AMCG00008585 NA coding upstream 300046 4662321 ~ 4673615 (-)
G50020 NA non-coding downstream 31937 4318783 ~ 4321888 (-)
G49984 NA non-coding downstream 190175 4162175 ~ 4163650 (-)
G49863 NA non-coding downstream 544563 3723229 ~ 3809262 (-)
G49871 NA non-coding downstream 572721 3779775 ~ 3781104 (-)
G49860 NA non-coding downstream 618348 3720969 ~ 3735477 (-)
G50126 NA non-coding upstream 457965 4820240 ~ 4829621 (-)
G50268 NA non-coding upstream 1578920 5941195 ~ 5941527 (-)
G50337 LOC104962440 non-coding upstream 1980401 6342676 ~ 6342964 (-)
G50361 NA non-coding upstream 2263834 6626109 ~ 6627025 (-)
G50372 NA non-coding upstream 2284736 6647011 ~ 6651343 (-)
AMCG00008554 NA other downstream 482556 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other downstream 576471 3769684 ~ 3777354 (-)
G49605 NA other downstream 1445160 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 1651403 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 2268800 2073783 ~ 2085025 (-)
AMCG00008602 NA other upstream 1224800 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 1293414 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 1386615 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 1424345 5786620 ~ 5793995 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 2476802 6839077 ~ 6885687 (-)

Expression


Co-expression Network