AMCG00008575


Basic Information

Item Value
gene id AMCG00008575
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4310994 ~ 4318313 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008575
GATGCATTACCAGGCAAGGAGGTAGTTGTGGAGGGGACCTTGCTGCAATACCAGGATGACAAATGGAGACAGCGCCACCTATCAGTCACAAAAGACTTTGCAGTGGAGAGTCGAGACTCCAAAGAGGTGTATCAGAAGGGCTGGGAGTGCAAAAGTATTCTAATCCTGACTGCCTGCCAGATCTGCACTTCTGTAGAGGAACACTGCCACCTACTGGACATCGCATGTCAGCACATCCCAGCTGGAACGGAAGGTCACCCTTCGGCCCGTGCCCAACGGACTTCCCGCTCTTTCTCCACCACCCATATCGTGCacccctgtgtttgtgtgccagATCTGCGGAAGGGCAGAGAGAGTGGCTCCGCGTTCTGCAGAGCGCCATACTTCACCACAGCACAGAGGAAGGAGAACTTTGAAACCCGGGCATTTGTGGAGGCTGTCCGATTTTACAGGCAGGAAAGGGGCAGCTACACCACTGGGGTCCTGATGATGGGGTCAGAAGAGGAGGTGCTGTCCAACGTTATTATGGAGGACATCTTGCCTGCGTTGTATGAGCAGCTCTTCCCCAGGCTGATTCAGTCAAAGGTCAGGAAGAGATATGGCTGGACACAGGATGTGTCTGGAGAGATAGATCAATGTGTAGCACGCTTGGCCGTTCCACTTCTGAGCACCACCTTCCAGGAGTTGGCCCCACCCCTCCATGCAGGATTGACCGGCGCCAGACAGCTATTCCTGGATGCCTGCGATGACATTATCAGAGCTGGTTGCACCGGCCAATCGCTGCAGGAGCTGATAAGCCCACTGAATATGCTCAGCAGAGGCTCGGCCCGGGCGACGGACTGCCTCGCCCTGTTGGAAAAgatggcaggcaggcaggcagggttGCAGGAAAGCTGGAGGATTGAGAGCAGTAGGTCGCTTATGCTCCAGGCCCAGAACTCAATTCAACAGCTGCTGGACAGTGCCGTGTTTACGTTCCGGCGTCTGCTGTCCCTGCAGTTCAACTACCGGCTAAGCCCAGCTCAATTCAACCGGGCCCTGCAGAATCAGCTGGATCATGACCTGACAGTGGTTCAGACACAGCTGGCACATAACACCCTCCTGGAAATCGTCCTGCCGGTGCTCCTGAAAGAGCTGGTGCCCAGATACAAGCTGGACCTGACCAAATATGAGCAGATGGTGTTCTCCGACTACAACAACCTCCTCCACATTGACAACATCTACCAGGGGGTGGTGAAGGAGGCACTGGTGCGAGAGATTAATGGCGTTCTGAAGGATGCTGGCAACATAGACGGGGGGTGGCCACCAGGCTCCTGGGATCCATTGGGAAGCCAGCTATCGGGCTCCGGCACCATGACGCCCAGCACTGGCTCCTACGAGAACGTGTGGATCGCCACGGAGGGAAGTGCTGTGGACGGACACCATAAAGCTCCAGCCCAAGAGTGTGGAGTGAAGATGGACGCAGGACAGTGCAAATGCGGGCACAACGGAGATGGAATGAGTTTTGTTCCGAAGGTGGGGCCGGTCGGCACGCCTGCCGGCCACGAGAGTAGACCGGACGGGGATTATATTTGCCTGGTTggtgctggagaaaactggaaCTAGTTTCTCACAAAGGCAGCTCCTGTGAACACCTTCCGGTGATGCCCCGTCCTCCTGAACTAACAGGACTGACAGATCAGCAAAACGTTCCCATATTTGACAACTTGCAACTTTGTATGGGAAAAATACCCAATCAAATGGTAGTCATTAAAAATCATCTGTTTGCAGAAGAATGTTAATTCTTATAGTCATAGATTAGATAATTGCTcatgtgtatttgaaataatgttgTTCACTTGtgcatattgtttttcttattttattttctctacagTAGGTCCCTATATGCAGTGATGTGTACAGGTTGTGTAACCCCCCCTCTGGACTGTCAGGAACTGCCCTAATTTCCTAACTGTGCCCCTACTCTAAACTGTTCTCTGCACGCTACTGcacagatgtatatatattcgcTTGCACTGAACACTCACTCATTGTAGCCTGTAGTACAGATTAGAGGTCATCATTGTAAATTCAGATAGTGAGTTCCAAGAGTTATTTACTAATTAACAGCATTACTTTAAccattattgttatcattagtATTACTAGTGGGATCGTTGTTTTATTGAGGCTTTGTCTGTGTATTTCACTTTGGTTTGTATTCTAGGATAATATCTTTATGCGGCCCAAAAGAATACTCTTCTGAAAGCGAGCACCTGCAGCTAACGCTCTCACAAATCTGCTATTGTTTACTTTCTCTTGtgcagaaattaataaaaacaaattatatcatCA

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008575 True 2337 mRNA 0.50 11 4310994 4318313

Neighbor

gene id symbol gene type direction distance location
AMCG00008576 LOC107570893 coding downstream 18716 4282719 ~ 4292278 (-)
AMCG00008573 NA coding downstream 30442 4279153 ~ 4280552 (-)
AMCG00008570 NA coding downstream 60238 4238584 ~ 4250756 (-)
AMCG00008571 NA coding downstream 136842 4165048 ~ 4174152 (-)
AMCG00008564 NA coding downstream 151398 4158622 ~ 4159596 (-)
AMCG00008577 NA coding upstream 11261 4329574 ~ 4332900 (-)
AMCG00008574 NA coding upstream 17364 4335677 ~ 4353090 (-)
AMCG00008572 NA coding upstream 35512 4353825 ~ 4362275 (-)
AMCG00008578 NA coding upstream 59771 4378084 ~ 4400390 (-)
AMCG00008581 pnpla6,LOC108258612 coding upstream 197459 4515772 ~ 4560370 (-)
G49984 NA non-coding downstream 147344 4162175 ~ 4163650 (-)
G49863 NA non-coding downstream 501732 3723229 ~ 3809262 (-)
G49871 NA non-coding downstream 529890 3779775 ~ 3781104 (-)
G49860 NA non-coding downstream 575517 3720969 ~ 3735477 (-)
G49858 NA non-coding downstream 617733 3691380 ~ 3693261 (-)
G50020 NA non-coding upstream 470 4318783 ~ 4321888 (-)
G50126 NA non-coding upstream 501927 4820240 ~ 4829621 (-)
G50268 NA non-coding upstream 1622882 5941195 ~ 5941527 (-)
G50337 LOC104962440 non-coding upstream 2024363 6342676 ~ 6342964 (-)
G50361 NA non-coding upstream 2307796 6626109 ~ 6627025 (-)
AMCG00008554 NA other downstream 439725 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other downstream 533640 3769684 ~ 3777354 (-)
G49605 NA other downstream 1402329 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 1608572 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 2225969 2073783 ~ 2085025 (-)
AMCG00008602 NA other upstream 1268762 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 1337376 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 1430577 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 1468307 5786620 ~ 5793995 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 2520764 6839077 ~ 6885687 (-)

Expression


Co-expression Network