AMCG00008577


Basic Information

Item Value
gene id AMCG00008577
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4329574 ~ 4332900 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008577
acATGAGCAGTACCAGTTGCCGGGTTCTCGTCTTCCCGTCCTCCGAGGAGCTGGGCCCCTCTCTGGCTCGCTTCATCTCTGCGAGGGCGAAGCTGGCTTTGGCCTCCAGTCGCGGCCGCTTCTCGCTGGGTCTGTCCGGCGGCAGTCTGGTCTCCATGCTGTCCCAGCACCTGCCCACTCTTCCCAGCCTGGACTGCAGCAAGTGGTTGGTGGGCTTCTGCGATGAAAGACTGGTCTCCTTTGAAGACCCAGAAAGCACCTATGGACTGTATAAGGCAAGGAGATcatatataggctacattataACGCAAGTGCTGGCCATCGATCCCGCCTTGACCGTGGATGAAGCAGCAAAAGACTACGCCCACAAACTGAGTGAGGCGTTCCCCAATGAAGAGATTCCGGCCTTtgatctgctgctgctgggcaTGGGCCCCGATGGACACACATGCTCCCTGTTCCCAGAGCACCCTCTCCTGGAGGAAAAGCAGCTCACTGTGGCCCCTATAAGTGACTCCCCCAAGCCCCCCCCTCAGAGAGTCACCCTCACCCTGCCGGTCCTCAACTCTGCCCGCTGTATCGCTTTTGTGTCAACAGGGGGCAGCAAAGCACCTGTGCTCAAGCATGTCCTCGAGGGAGGCGAAGGCCCGGCGATGCCCGCCGCTCGCGTCAGACCGTCTCCCGGGGAGCTGCTGTGGTTCGTGGATGAGGCGGCAGCTGCCTCCCTGACCCGGAGTGTGGAGAGGCCGTCTGCCGGAGCAGTGCTC

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0017057 6-phosphogluconolactonase activity molecular_function

KEGG:

id description
K01057 PGLS, pgl, devB; 6-phosphogluconolactonase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008577 True 767 mRNA 0.61 5 4329574 4332900

Neighbor

gene id symbol gene type direction distance location
AMCG00008575 NA coding downstream 11261 4310994 ~ 4318313 (-)
AMCG00008576 LOC107570893 coding downstream 37296 4282719 ~ 4292278 (-)
AMCG00008573 NA coding downstream 49022 4279153 ~ 4280552 (-)
AMCG00008570 NA coding downstream 78818 4238584 ~ 4250756 (-)
AMCG00008571 NA coding downstream 155422 4165048 ~ 4174152 (-)
AMCG00008574 NA coding upstream 2777 4335677 ~ 4353090 (-)
AMCG00008572 NA coding upstream 20925 4353825 ~ 4362275 (-)
AMCG00008578 NA coding upstream 45184 4378084 ~ 4400390 (-)
AMCG00008581 pnpla6,LOC108258612 coding upstream 182872 4515772 ~ 4560370 (-)
AMCG00008586 NA coding upstream 283915 4616815 ~ 4621744 (-)
G50020 NA non-coding downstream 7686 4318783 ~ 4321888 (-)
G49984 NA non-coding downstream 165924 4162175 ~ 4163650 (-)
G49863 NA non-coding downstream 520312 3723229 ~ 3809262 (-)
G49871 NA non-coding downstream 548470 3779775 ~ 3781104 (-)
G49860 NA non-coding downstream 594097 3720969 ~ 3735477 (-)
G50126 NA non-coding upstream 487340 4820240 ~ 4829621 (-)
G50268 NA non-coding upstream 1608295 5941195 ~ 5941527 (-)
G50337 LOC104962440 non-coding upstream 2009776 6342676 ~ 6342964 (-)
G50361 NA non-coding upstream 2293209 6626109 ~ 6627025 (-)
G50372 NA non-coding upstream 2314111 6647011 ~ 6651343 (-)
AMCG00008554 NA other downstream 458305 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other downstream 552220 3769684 ~ 3777354 (-)
G49605 NA other downstream 1420909 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 1627152 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 2244549 2073783 ~ 2085025 (-)
AMCG00008602 NA other upstream 1254175 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 1322789 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 1415990 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 1453720 5786620 ~ 5793995 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 2506177 6839077 ~ 6885687 (-)

Expression


Co-expression Network