AMCG00008580 (pnpla6,LOC106564686)


Basic Information

Item Value
gene id AMCG00008580
gene name pnpla6,LOC106564686
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4561991 ~ 4572874 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008580
ATGGGACAGAGCACTTCTGGACAAGAGTCGGATGAGGATAGGCGAATCAAGACCTTTGTGGAGGACCAACTACAAACCAGCATGaTGGTGGGGGTGGTTATCGGTGCTGGCGTCTCGATCATCTTCATCGCCATCCTCATCTTCTTCGTCCTGCGCCGGATCCAGCTGAGGAATATCCAGGCTCAGGAAACCCCTAAATACCGCTTCCGCAAGAGGGACAAGGTCATGTTCTATGGACGCAAGATTATGCGCAAGGTCTCTCAGTCCACCTCCTCTCTTGTGGGGACCACCTCGTCACGCCCGCGCTTAAAAAAGAAGCAGAAGATGCTAAATATCGCCAAAAAAATCTTGCGCTTCAAGAAGGAGGTGCCCACGCTGCAGATGAAGGAGCCGCCACCCTCAGTGCTGGAGGCAGATCTGACAGAATTCGATGTGGCCAACTCCCACCTGCCCTCCGAAGTCCTCTACATGCTGAAAAACGTCAGggTGCTGGGCCACTTTGAGAAGCCTCTGTTCCTGGAGCTGTGCAAGCACATGGTGTTCTTGCAgttccagcagggggagtaCGTCTTTAGACCGGGACAGCCTGACAGCAGTATATATGTGGTCCAAGATGGCAAGCTGGAGCTCTGCCTCACTGGGCAGGTGGGTAAGGGGCAGTCCCTGAAAAACTCCAGGCTACGCAATTTGCCACCAAGTCTCACCTCCAGCACGTTGCACTACATACTGTGGCCCAGCTGTCTCCCACAGGACTTACGCAGAGTCCCAGTTCAATTCATTATCTAG
>TU62655
TTGAATGGAAGATTAACGCATTTGTTATCATGGATTAAAAGACACATCTAAAGCAAGGGGTAAATATGAGATTCTgactttaaaatactgtattctgGGGTTGTCTTTCAGAGCTGTTGATGGACTGGTCTCCCAAACAAGGCGTTGTAGAATGGGACAGAGCACTTCTGGACAAGAGTCGGATGAGGATAGGCGAATCAAGACCTTTGTGGAGGACCAACTACAAACCAGCATGaTGGTGGGGGTGGTTATCGGTGCTGGCGTCTCGATCATCTTCATCGCCATCCTCATCTTCTTCGTCCTGCGCCGGATCCAGCTGAGGAATATCCAGGCTCAGGAAACCCCTAAATACCGCTTCCGCAAGAGGGACAAGGTCATGTTCTATGGACGCAAGATTATGCGCAAGGTCTCTCAGTCCACCTCCTCTCTTGTGGGGACCACCTCGTCACGCCCGCGCTTAAAAAAGAAGCAGAAGATGCTAAATATCGCCAAAAAAATCTTGCGCTTCAAGAAGGAGGTGCCCACGCTGCAGATGAAGGAGCCGCCACCCTCAGTGCTGGAGGCAGATCTGACAGAATTCGATGTGGCCAACTCCCACCTGCCCTCCGAAGTCCTCTACATGCTGAAAAACGTCAGggTGCTGGGCCACTTTGAGAAGCCTCTGTTCCTGGAGCTGTGCAAGCACATGGTGTTCTTGCAgttccagcagggggagtaCGTCTTTAGACCGGGACAGCCTGACAGCAGTATATATGTGGTCCAAGATGGCAAGCTGGAGCTCTGCCTCACTGGGCAGG

Function

symbol description
pnpla6 Predicted to enable lysophospholipase activity. Acts upstream of or within anterior/posterior axis specification; axonogenesis; and negative regulation of BMP signaling pathway. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Boucher-Neuhauser syndrome; Laurence-Moon syndrome; Oliver-McFarlane syndrome; and hereditary spastic paraplegia 39. Orthologous to human PNPLA6 (patatin like phospholipase domain containing 6).

NR:

description
PREDICTED: neuropathy target esterase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008580 False 786 mRNA 0.54 7 4562142 4572874
TU62655 True 797 TUCP 0.51 7 4561991 4572734

Neighbor

gene id symbol gene type direction distance location
AMCG00008579 NA coding upstream 49931 4510990 ~ 4512060 (+)
AMCG00008569 NA coding upstream 463835 4097796 ~ 4098156 (+)
AMCG00008559 NA coding upstream 538498 4022525 ~ 4023493 (+)
AMCG00008560 NA coding upstream 551846 4009198 ~ 4010145 (+)
AMCG00008555 NA coding upstream 600941 3957541 ~ 3961050 (+)
AMCG00008588 NA coding downstream 227580 4800454 ~ 4812907 (+)
AMCG00008587 NA coding downstream 251253 4824127 ~ 4835656 (+)
AMCG00008590 NA coding downstream 326571 4899445 ~ 4904073 (+)
AMCG00008593 LOC107093428 coding downstream 469880 5042754 ~ 5055756 (+)
AMCG00008594 NA coding downstream 521490 5094364 ~ 5108804 (+)
G50066 NA non-coding upstream 34439 4515496 ~ 4527552 (+)
G50061 NA non-coding upstream 73753 4487999 ~ 4488238 (+)
G50055 NA non-coding upstream 93228 4462362 ~ 4468763 (+)
G50011 NA non-coding upstream 253155 4307826 ~ 4308836 (+)
G49944 NA non-coding upstream 526939 4034749 ~ 4035052 (+)
G50086 NA non-coding downstream 10028 4582902 ~ 4583205 (+)
G50142 NA non-coding downstream 344129 4917003 ~ 4917257 (+)
G50153 NA non-coding downstream 397135 4970009 ~ 4970248 (+)
G50180 NA non-coding downstream 576594 5149468 ~ 5149857 (+)
G50181 NA non-coding downstream 577021 5149895 ~ 5155484 (+)
G49982 NA other upstream 396508 4162058 ~ 4165483 (+)
G49980 NA other upstream 401929 4156088 ~ 4160062 (+)
AMCG00008526 NA other upstream 676387 3429897 ~ 3885604 (+)
G49583 smarca4,LOC102779508 other upstream 1673095 2886766 ~ 2888896 (+)
G49523 NA other upstream 1791947 2765879 ~ 2770044 (+)
G50215 NA other downstream 1023149 5596023 ~ 5596799 (+)
G50243 NA other downstream 1165667 5738541 ~ 5742750 (+)
G50448 NA other downstream 2384737 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 2724012 7296886 ~ 7315850 (+)
G50583 NA other downstream 3360955 7933829 ~ 7939771 (+)

Expression


Co-expression Network