AMCG00008582 (qtrt1)


Basic Information

Item Value
gene id AMCG00008582
gene name qtrt1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4758673 ~ 4767261 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008582
CCGCTACTGACGGTTGCAAGAGCGCATGCGCACTCGGAAGACTTCCTGGTTCAGCCGGGGCGGTGCGTGTGTTTTTCCAGCATGGCTGCTGCGGTCTCTCCAGCTGCTCCGGTATCCGGCATGGGAGCGCTCAACTCCGCTCTGTCGGCCGGGAGGACTGCCTCAGGGGCCTCGCTTGCTCTCCGCATAGTAGCGGAGTGTCCGGTGAGCAAAGCCCGGGCCTGTGACCTGACCCTGCCACACTGCGAGGTCAGCACGCCGGTTTTCATGCCAGTGGGCACGCAGGGCACGATGAAAGGCATTACCGTGGACCAGCTGGAAGCTCTCGGTTGTCAGATCTGTTTAGGCAACACATACCACTTGGGCATGAGGCCGGGTCCAGAACTTATCAAGAAGGCCAATGGACTGCATGGCTTTATGAACTGGAAACGCAACCTGCTTACGGACAGCGGTGGCTTCCAGATGGTGTCTCTGGTGGAGTTATCCGAGGTGACCGAGGAGGGGGTACGCTTCCGATCCCCCTATGATGGCAAAGAAATCCTGCTTACTCCTGAGGAATCCATTGGCATCCAGAACACACTGGGCTCAGATATTATGATGCAGCTGGATGATGTGGTCAGCAGCACAGTCACAGGGCCGCGTGTTGAAGAGGCTATGTACAGGTCCATCAGATGGTTGGATCGCTGCATTAAAGCCAACAGAAACCCAGACCAACAGAATCTTTTCGCCATCATCCAGGGAGGGCTGAATGCTGACCTCCGCAAGAAATGCCTTGAAGAGATGACTAAACGAGAGGTTCCTGGCTTTGCAATCGGAGGGCTGAGCGGGGGAGAGGAGAAAGACGATTTCTGGAAGATGGTGACCCTCAGTACGGACCACCTGCCCCGAGAGAAGCCCCGCTACCTCATGGGAGTTGGGTACGCCACGGatttggttgtgtgtgtggctcTGGGCTGCGACATGTTTGACTGCGTGTTTCCCACACGAACTGCGGTGACTCTGGTGCCCTGGGGGTCCTTACAACTAAAAAACAAGCAGTTCGCCAAGGATCTTGGGCCCATCGATCCCGACTGCCAGTGTGCCACGTGCAAAAGGCACAGCCGCGCCTTCCTGCACGCCTTGTTCAAGACCGATACGGCCGCCATGCATCACATAACTGTGCACAATATTGCCTACCAGCTCTCTCTGATGCGATCCGTCCGGCAGAGCATCATCGAACAGCGCTACCCTCAGTTTGTACGGAGCTTCATGTCTCGCATGTACCCCAGCAAGGACCGCTACCCCTCCTGGGCAGTGGAGGCGCTGGCATCGGTCAACATCACCCTGGACTGAGGGGAGCGGGAGGCAGGAATGATGGGGACCCGATCCTGAGCACGGGAAATCGTATCCCCCAAACTCGCCACCAAGGCCAGTGCTTGGGTAGACTTTTAGCATttcgattttattttaaaatactttgtttttgtttttaaaccagttATACCTCTACTGTGGCCATGAGTTTGGGACCAACTTAATGGACTTTCTGCAAGTGATGcaagaacatttttttgtttttttactgcttgtatttttttgtattattagagACAATGTCATTACTCGGGTTGGACCAGTTGACATCGGTTGTCCAACAAGGTTCAACTCCACTGCCTCAGATTTAACTTAAACTGGGACTTCAGACGGGTCACTCAATACCCGGAAGAACATCCTTATAGTAGGTGTAGGTTTAGCATTCCCATATTGTTGAAAAGCCTTAAAACCTCCCACACTGGGAGTATGTCATCATATCCTTAAGCCTGACAATGCTAACTGGACAGATTTTATACCAGATCACCTTGTTTTCACTATGGCACTGACTGAAACTACGGTGCGTGCATTTTGGGTAATATATTCAGAATGCTTAAAGACGGTTATGGGCTAAACTATGTCCTTGAACTTGcggttttagtttttagttttttatcttgtgtttttataacGACACTGTATgttatacaatatttgtatgtcTTGAGTAAGACCAGAACAATCCTTCAATCCTTTTGTACTAGGGGAGGATAATGAACTACTGAAGGATTCACAATCGAGAATGTGTGTGAAGTAATGATCAGTAAACGCAGCTGTCTGAActcctctgtgtgtttcttgGCAATTGATTTAAGTGTGAATGCTAGGAGTGATGACTAaaagatgatgattatttattattgttattattattttgaagtaaTGCGACCACTTTcaaatttttgtattttcacattcaatttaagAAGGACGATCTTTCATTTGCC

Function

symbol description
qtrt1 Predicted to enable protein heterodimerization activity; protein homodimerization activity; and queuine tRNA-ribosyltransferase activity. Predicted to be involved in tRNA modification. Predicted to act upstream of or within tRNA-guanine transglycosylation. Predicted to be located in mitochondrial outer membrane. Orthologous to human QTRT1 (queuine tRNA-ribosyltransferase catalytic subunit 1).

NR:

description
queuine tRNA-ribosyltransferase catalytic subunit 1

GO:

id name namespace
GO:0008616 queuosine biosynthetic process biological_process
GO:0008479 queuine tRNA-ribosyltransferase activity molecular_function

KEGG:

id description
K00777 QTRT1; queuine tRNA-ribosyltransferase catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008582 True 2297 mRNA 0.49 10 4758673 4767261

Neighbor

gene id symbol gene type direction distance location
AMCG00008583 LOC104945820,LOC101076945 coding downstream 60892 4680530 ~ 4697781 (-)
AMCG00008585 NA coding downstream 85058 4662321 ~ 4673615 (-)
AMCG00008584 NA coding downstream 115057 4621852 ~ 4643616 (-)
AMCG00008586 NA coding downstream 136929 4616815 ~ 4621744 (-)
AMCG00008581 pnpla6,LOC108258612 coding downstream 198303 4515772 ~ 4560370 (-)
AMCG00008589 NA coding upstream 89646 4856907 ~ 4864403 (-)
AMCG00008592 NA coding upstream 122807 4890068 ~ 4894519 (-)
AMCG00008591 NA coding upstream 178148 4945409 ~ 4953366 (-)
AMCG00008595 NA coding upstream 342455 5109716 ~ 5110501 (-)
AMCG00008599 NA coding upstream 390034 5157295 ~ 5165357 (-)
G50020 NA non-coding downstream 436785 4318783 ~ 4321888 (-)
G49984 NA non-coding downstream 595023 4162175 ~ 4163650 (-)
G49863 NA non-coding downstream 949411 3723229 ~ 3809262 (-)
G49871 NA non-coding downstream 977569 3779775 ~ 3781104 (-)
G49860 NA non-coding downstream 1023196 3720969 ~ 3735477 (-)
G50126 NA non-coding upstream 52979 4820240 ~ 4829621 (-)
G50268 NA non-coding upstream 1173934 5941195 ~ 5941527 (-)
G50337 LOC104962440 non-coding upstream 1575415 6342676 ~ 6342964 (-)
G50361 NA non-coding upstream 1858848 6626109 ~ 6627025 (-)
G50372 NA non-coding upstream 1879750 6647011 ~ 6651343 (-)
AMCG00008554 NA other downstream 887404 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other downstream 981319 3769684 ~ 3777354 (-)
G49605 NA other downstream 1850008 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 2056251 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 2673648 2073783 ~ 2085025 (-)
AMCG00008602 NA other upstream 819814 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 888428 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 981629 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 1019359 5786620 ~ 5793995 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 2071816 6839077 ~ 6885687 (-)

Expression


Co-expression Network