AMCG00008591


Basic Information

Item Value
gene id AMCG00008591
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4945409 ~ 4953366 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008591
CTCCTTTCGAAGCTCGCTCTTCCCCACCCTCTCGTCTCCCTGGCTGCTCGGCTTTCACACACTGTAGTAGGAGGGGCACTCCCGCcttcaaatgttttgttgttttcccctcAGTAGCAGTGTAATAAGTGGCAGCTGCTGAAACAACatcaaacaaaaaccaaaaggtagagagacagaaaagaacaacataaaaaaacagaaagtcCCCGGGAGCTCTCTGTCCCCACAGGTTCAGCACTCAGACTTCACTCGAGCAGCTCCCAGCACAGCGTCTTCCTGCTGTCTCGGGATGACAGTGCTACACTGCAAAGAGCCGGGCTGTCACGACGCACTCTCCTCTCACAGACGACTGATTCACGGGTTGCTCCTGTGGGTCACCCTGCTCTCGCTGTCACAGGTGGTCGGCCTGGCGCTATTTTTCACCCTGGTGTACCCCGTTCAGgACAAAACTGAAAAGCTTCCCAGTGTGTTGCTGATTGTGGCAGAAAGTGaaaataatggaaCCATTCCTTGGATGGAAGAAAACAGTGATGAAATGCTGGAGAATGTCACTTTAAAGCAGAATGGGGAGGTAGTGATCCGGAGTGATGGGCTGTACTACCTCTACACACAGATCAGCGTGCTACAATCAAGCCCCAAAACTACCTACACAGTGGAAATGAAGTGGAAGACGGGCAAAGAAGATAACGTACTGCTGAGGAGAAGATTCTCAAAGAACGACAGCCAGACCGCCACTTCGGGCTACATGGGGCGCCAGTTCAAGCTCTCTCTGGGTGACAGTATTTCTATCACCTGCTCTGGGAAACCACAGATAGACAGTCAGCCCACTGAGACATTTTTTGGGATACACATGCTGCAACCATTGAAGTGAACATGGCAGCTAGCTAGCAGAGGAGGAAATCTGAGAAGCATGTTCGCGTCCCCCCCTCATTCTGCAGTGGTGCCCTCTCTCGTGCTGGGATGGGATACTGGAAGGTTGGCTGGCCTTGCCCTGTGTTTTGCAGTCTTCTTGGTTGCCCATATCTCAGGACCACAGCCTCAGCCCTTGGATATTTGAAAGTCTTGAAGCACCAGGTTTACCTTAAAACATTTCGGCCACATTTTGCTCAAATGACAGGCAACAGGTGTCTACTTGTCCCTCTGCAAGAGACAAGCAGCACCACCATCAATGGAATAaactaacaagaaaaaaaagatagtgaagaagaaaacaaacgcTAAAAGATTAAGAATTTTCAGGCATAAGCTGTCAGTCTGGCTAAGCCCTGGAAACATTACACACCTGACACTGAATGtacttgtgtatttatattgagttatttatttgttgaacCAAGAAAACCAAAGCCCACATCCAAAACGATTGCTATTAAAGAAGAGGGCTTCCCAAGTGTAATTTAGCCGTTAAAGTATCATGCCTACGGTTTCTCTTCTCATTACTCAAATCCTGAAATGATTTGTAAGATAGTGCACTCCACTCACTTCCAAACAGAGATTAAATCAGAGATAAATCGGTTTTGATGCCCAAGGAGCTAAATTTAAATagaagtagtagaaagtggcttctgccaaaaaaaattactttgatAAATTACTAGATTTAGTAGATTACTAGATTTTGCTTTTTCGCAAGTAGATTGATTTGGTTAGGACCCTCTTTATCTCAGTTGCCCTGATCTGCTAATGAGAATAAAGTTTTGGACATGCATGTTCaggaatgtaaagaaaaaaaaagaagaattagATGTATTTGTGAACCATACTACAGGAGCCCAAGGTACTTGTATAAGtacaaacttatttatttaaaaccatttctgaatgtctgtctgtgtttacaTCTGTCGATAGAACCTTTCCTGCTTGCTCAGGATTTCAGCAGTGTGCTTCTGTTATGTTATTTAActtattgtttttaagaatgTTTCCTTTTACATACAAGGCAAGCTATTATCAAATGACTGATCGGAGAAGGAATGGGTGTCATTCCATTAGTACCGGTTTCCTAAGCTCACACAGAACAGTGATTCTAATTCAAGAAGCACTGTACAATACCACATATGTAACTCTCTGGTtgtctattataattattttgattgtcTATCTAggctaattatttatttataatatatatttttcactctgctaatgtttgttttttcccaccATTATTGTCTACACCCAGAGCAATGGTCCTAACTGAAATATCATTAAAGGAGCAGATTTAAAATGGGAGATCCTGTtttgacacacacaaaattaaagcTGTGATCCTTGGAG

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008591 True 2283 mRNA 0.43 3 4945409 4953366

Neighbor

gene id symbol gene type direction distance location
AMCG00008592 NA coding downstream 50890 4890068 ~ 4894519 (-)
AMCG00008589 NA coding downstream 81006 4856907 ~ 4864403 (-)
AMCG00008582 qtrt1 coding downstream 178148 4758673 ~ 4767261 (-)
AMCG00008583 LOC104945820,LOC101076945 coding downstream 247628 4680530 ~ 4697781 (-)
AMCG00008585 NA coding downstream 271794 4662321 ~ 4673615 (-)
AMCG00008595 NA coding upstream 156350 5109716 ~ 5110501 (-)
AMCG00008599 NA coding upstream 203929 5157295 ~ 5165357 (-)
AMCG00008597 adgrl1,LOC107599314,LOC107711219 coding upstream 223233 5176599 ~ 5200865 (-)
AMCG00008596 adgrl1,LOC107661818,LOC107599314 coding upstream 261030 5214396 ~ 5222563 (-)
AMCG00008598 LOC106594611 coding upstream 309786 5263152 ~ 5276428 (-)
G50126 NA non-coding downstream 115788 4820240 ~ 4829621 (-)
G50020 NA non-coding downstream 623521 4318783 ~ 4321888 (-)
G49984 NA non-coding downstream 781759 4162175 ~ 4163650 (-)
G49863 NA non-coding downstream 1136147 3723229 ~ 3809262 (-)
G50268 NA non-coding upstream 987829 5941195 ~ 5941527 (-)
G50337 LOC104962440 non-coding upstream 1389310 6342676 ~ 6342964 (-)
G50361 NA non-coding upstream 1672743 6626109 ~ 6627025 (-)
G50372 NA non-coding upstream 1693645 6647011 ~ 6651343 (-)
G50381 tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378 non-coding upstream 1739440 6692806 ~ 6706289 (-)
AMCG00008554 NA other downstream 1074140 3430814 ~ 3871269 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other downstream 1168055 3769684 ~ 3777354 (-)
G49605 NA other downstream 2036744 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 2242987 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 2860384 2073783 ~ 2085025 (-)
AMCG00008602 NA other upstream 633709 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 702323 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 795524 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 833254 5786620 ~ 5793995 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 1885711 6839077 ~ 6885687 (-)

Expression


Co-expression Network