AMCG00008601


Basic Information

Item Value
gene id AMCG00008601
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5614919 ~ 5635748 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008601
CTCAGCTTCAAAACGCGCTGCGGTATCTTGTGCGTTTGCGTCGCTCAAGTGATTCTGTCAAAACTGCAAATTCATAGTTCAGATGAACTCACAAAGCCGTACCATGTACAGCCTGTtttcactgtgttgtgttgtgatttATCTTGGAAGACTTATGGTCTTAGGTGAAATCCTATGAGACAGCCCTGGCACAGGAGGTGGAGAGTCGGCGGGCGGTACAAATAGCCTCAGATTGGACGTGCGCTTCAATCCCGAGAGCTGCGCCGCACGCAGTCTGCACTGACCGGACCCAGGATGCTGCCCTCTCTGGAGAGCGTTTGGGCCTCAGTGTTCCCGGGCCTCTCTCCCCTGCAGGCGGGGCTGTTGAGCGTCACCCTGCTCCTGCTCTGCACGCTTCTGACCAAGGCCACCCTGATGGTCGTCTCCTTCCTGTGGCGCTACAACTGCAACTCGCAGCGGCTGCGCTGCTTCGCCCAGCCCCCGAAGCGCAACTGGCTGCTGGGCCATCTTGGCATGATGCGGAATACAGAGGAAGGCTTGCGGTCCGTGGATGAGCTGGTCAAGACCTATGAGCATTCCTGTTCTTGGTTGTTTGGCCCCTTCTACTCCATCATCAGACTCTTCCATCCTGACTACATCAAACCCATTCTGCTGGCCTCAGcTTCCATCGCTTACAAAGATGAACTCTTCTACGGATTTCTGCGACCATGGCTAGAAGGCTCCTCACTCCCGCCTTTCACTTTGACATCCTCAAGATCTACGTGGACATTTTCAACAAATCCACCAACATCATGCATGCTAAGTGGCGCCGCCTATTGGCTGAAGGGACAACCTCCTTCGACATGTTTGAGCAGATCAGTCTGATGACTCTGGATAGCCTACTGAAATGCACCTTCAGCTATGACAGTAATTGCCAAGAGCACCCCAGTGACTACATTGCAGCCATCTACGAGCTTAGCACACTGGTGGTCAAGCGGGAGCACTACCTCCCTCACCACTTCGACTGGCTGTATTGGCGGTCAGAGGAGGGGCGGCGCTTCCGCAAGGCCTGCAATCTGGTGCACCAGTTCACTGCCGACATCGTCCAGCGCCGCCGAGCCCTGATCCAAGAGCAGGGGTCCGAAGAGCAGCTGAGACCCAGGAAGGGCAAAGTGACCGATTTCATCGATGTCCTCCTCCTTTCCAAGGATGATGATGGCAATGGACTCTCTGTTGAAGAAATAAAAGCGGAGGCCGACACGTTCATGTTTGAAGTACACCCCGAATACCAGGAGAAGTGCCGGGCCGAGGTCAATGCATTACTGCAGGCTCAAGACAACAAGGAAATTGAGTGGAATGATCTCTCCAACCTCCCTTTCACCACCATGTGCATTAAGGAAAGCCTGCGTCTGCACCCCCCCGTCACTGCGGTGACCCGTCGCTTCTCCGAGGACATGAAAGTGCCAGAAGGTCGAGTTATCCCTCAAGGAAATATCTGTCTGGTCAGTATTTATGGGACCCATCACAACCCCAAAATCTGGCCTGATCCTGAGGTTTATAATCCCTACCGCTTTGACCCAGACCAGTCAGAGGGGCGATCCTCACATGCTTTCATCCCTTTCTCAGCAGGGCCCAGAAACTGTATCGGTCAGAACTTCGCCATGGCCGAGATGAAAGTGGTGGTGGCGCTGACCTTGCATCACTTCCGGGTCACTCCAACAGCCGAAGAGGTCCGCCGCAAGCCAGAGCTCATCCTACGAGCTGAGGGGGGGTTGTGGCTACAGCTGGAGCCAGTTACCCAACAGTGAAGCACCCATCTATAAAGAGTAGATAGTATTGTCTGGTGCCATACATTTTCCTGGTTAATCAGTTTGCTTACTTGTTGCAcaggcaattattattattcaaattgtcACTTTGGTATCAGCAATtgtgggaagaaaaaagaaaaaaaaaagctttctgcTGCAGACCAATAAGCTTTTTTTAGATGCAAGACTAgagtgttattttatatttttagttttttactgcTGACTCTTTCAATGTGAAATTGTGTTTATAGTtaaaacatatgcatatatttagGTTTTATGTTCTCTGTTTAGATAATGCCTTGCGCACATACAATTTTTActggtttattattaatacagccCCAGTACCATTGTAAAGCATTTACCCAGTGATTGATGAAACCTACTACTTAATACTTTTCAACACTTTTCTCTTATTTTCACAACATTTGATAAAGTATGGTACTGTACCTTTTCCCACCACTATATGGATTGTACTATATTACCAATTTTGTGGGGAAATCTTTCAAGAAATGAATCCCTATGTATAACTTGCACATACTGGATACCTACTATCGTTatatctgaatttatttttggcACTTTACGTTCCATTTATTACTCTATCTGTTCCGACTGTACTGCACAAAGCACTGAGGGATTGATTACCAGAATTTCTGCTCTTACCTGAACTGCCCCCAAACAGAATCATACACCCTCTCCCCATTCATTGAACTCTAAATAGGACATCTGCTGTATATTGTATTACCTTGCTGTTACTGTACCACGTTTCTTGAGAACAAAGGTATTTGGGGTGACAACTGGAAGTCACCCTTGGATAaggggcatctgccaagaaataaatacacacaataacataTACATTCagtgatgtttctttttcattattattctgttGTATGATGCTAAATTGTATCTGAAAGACGAGAGAGTAAACAAATTGTGGAtgggac

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K17731 CYP4F22; ultra-long-chain fatty acid omega-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008601 True 2749 mRNA 0.47 13 5614919 5635748

Neighbor

gene id symbol gene type direction distance location
AMCG00008594 NA coding upstream 506115 5094364 ~ 5108804 (+)
AMCG00008593 LOC107093428 coding upstream 559163 5042754 ~ 5055756 (+)
AMCG00008590 NA coding upstream 710846 4899445 ~ 4904073 (+)
AMCG00008587 NA coding upstream 779263 4824127 ~ 4835656 (+)
AMCG00008588 NA coding upstream 802012 4800454 ~ 4812907 (+)
AMCG00008606 NA coding downstream 109056 5744804 ~ 5757635 (+)
AMCG00008605 NA coding downstream 131016 5766764 ~ 5776682 (+)
AMCG00008607 NA coding downstream 208597 5844345 ~ 5847681 (+)
AMCG00008604 NA coding downstream 246245 5881993 ~ 5883048 (+)
AMCG00008616 NA coding downstream 395099 6030847 ~ 6045870 (+)
G50214 NA non-coding upstream 19867 5594712 ~ 5595052 (+)
G50213 NA non-coding upstream 21988 5592436 ~ 5592931 (+)
G50212 NA non-coding upstream 23718 5586800 ~ 5591201 (+)
G50206 NA non-coding upstream 34897 5579222 ~ 5580022 (+)
G50196 NA non-coding upstream 54310 5560021 ~ 5560609 (+)
G50255 NA non-coding downstream 305459 5941207 ~ 5941527 (+)
G50336 LOC104962440 non-coding downstream 706946 6342694 ~ 6342978 (+)
G50340 NA non-coding downstream 736684 6372432 ~ 6372911 (+)
G50342 NA non-coding downstream 738917 6374665 ~ 6375034 (+)
G50346 NA non-coding downstream 854909 6490657 ~ 6518591 (+)
G50215 NA other upstream 18120 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 1042045 4561991 ~ 4572874 (+)
G49982 NA other upstream 1449436 4162058 ~ 4165483 (+)
G49980 NA other upstream 1454857 4156088 ~ 4160062 (+)
AMCG00008526 NA other upstream 1729315 3429897 ~ 3885604 (+)
G50243 NA other downstream 102793 5738541 ~ 5742750 (+)
G50448 NA other downstream 1321863 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 1661138 7296886 ~ 7315850 (+)
G50583 NA other downstream 2298081 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 2643105 8278853 ~ 8324778 (+)

Expression


Co-expression Network