AMCG00008624 (gipc1,LOC103468782,LOC102231162,LOC107711205,LOC106606841)


Basic Information

Item Value
gene id AMCG00008624
gene name gipc1,LOC103468782,LOC102231162,LOC107711205,LOC106606841
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6651424 ~ 6659244 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008624
GACGACCCTCATTTGATCCCCTCCAGTTTGGTGAGTTAGTGATCCCGGGATCGTTTCTTTTGGGAGACATATGAGCCAAGGCGAGGAATGAGACGGCCAACCGAAACTCTGCGAAAATCTTGTTTGTTCCGTCTGGGGTTTCTTGTTTGGGTCAATCAGGACTTCATTTTCCAGTGGCCTTCCAGTCACGCTTCTACacaatagtttgtttttagCCACGACGCTGCATGGGCTGTGTCTGGGAGGTCTAGCCAGTGTGGCTGCTTTTCTCCCATACGCACGCTTGGTGTATTCTCAGAGTTCGTGGGGGTTCCCTGTTGAACAGTTGAATGTGGAGGTGTGCCATCTTGCCTTGGTGTGATCTGTGCCCAGTTGGTATGAGTGCAGTTGGGCGAGTGCCTGTGTAAGCCTTTACATTTCCTTGTTGGGGAGGACCAGTCAGACGAAGAGGCCTCTGTCATGCCTCTCGGACTTGGGCGGAGGAAGAAGGCCTCTCCGCTGGTGGAAAATGAAGAGGCTGAGCCCATCAGGGCGGGTATGAACGTGCCAGGCCTGGAGGGCAGTGCAGAGGGCACACTGGGCCTCCAGCCCGGATTGCCACCACCTCCCCCTGGCCTGCGGCCCAGGCTCGTCTTCCACACCCAGCTGGCTCATGGCAGCCCCACTGGGAGGATAGAAGGCTTCAGCAATGTCCGGGAACTCTACAGCAAAATTGGAGAAGCCTTTGGGATCGCAGCAGCAGAGATTGGCTTGGAGGACTTCATATTTGCCCACATTAAGGGTCAACGCAAGGAGGTGGATGTTTTCAAGAGTGAAGATGCCCTGGGTCTCACTATCACTGACAATGGAGCTGGATATGCCTTCATCAAGAGAATAAGAGAAGGGAGCATCATTGACAGGATTCAAGTTATCAATGTAGGGGACATGATCGAATCCATTAATGGCCAGGGCTTGATTGGTTGTCGGCACTATGAAGTGGCTAAAATGCTCAAGGAGTTGCCTAAAGGACGAGACTTCAGTCTGAAGCTTGTGGAGCCCATGAAAGCATTTGataTGATCAGCCAGCGCTCAGGAGGTGCAAGGTCTGGTTCTGCATCACAGCTGGGCACAGGACGGGGGACACTTCGCCTCCGATCCAAGGGTCCAGCTACTGTAGAGGAGCTGcCATCTGCATTTGAAGAGAAAGCCATTGAGAAGGTGGATGACCTTCTGGAAAGCTACATGGGAATTCGGGATTGTGAGCTAGCAGCGACCATGGTGGAGCTagggaaagacaaaaaaaacccaGATGAGTTTGCAGAGGCCCTGGATGAGACCCTGGGTGATTTTGCCTTCCCTGATGAGTTTGTGTTCGATGTGTGGGGAGCCATTGGGGATGCCAAAGTGGGGCGAGTGTAGCCAAGGACAAGGGTGTGAACTCCAAAACAGAAGacatttttcttgtatttctaaCACCAAATTccattgtacatttttttttcttctttttttctttccaagagGTTGCCCCCGTTTTTTTGAGAGAATAAAGGTAATCAGGGGCAGAACTACCACATATGTAGTACTTTAGTCCTGCCCCCAATTACCTTTGTGcttctatatatattaaataaaatactgctcAGTAAAAGGCCATGTCAATATAACAGACTACTACAAGTTTTTCAGTAGTGATGCAGAGCTGAAGGGGGTGGAAGTTATGTACTAAAAGCTTCATTTTATTGTCCTTTATTGTCCAAGTCGTGATTCTGAAGCTTACATTAATTAATGGTCAGTGAGTTTGCtcaagatttaaatatattttcttaattacaaTTTGCCTCTAATATACactacaagtttaaaaaaactgtCCCAGaccattgattttttttttg

Function

symbol description
gipc1 Enables MAP kinase activity. Acts upstream of or within with a positive effect on sprouting angiogenesis. Acts upstream of or within angiogenesis; artery morphogenesis; and lymphangiogenesis. Is expressed in dorsal aorta; neural tube; posterior cardinal vein; and somite. Orthologous to human GIPC1 (GIPC PDZ domain containing family member 1).

NR:

description
PREDICTED: PDZ domain-containing protein GIPC1

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0048844 artery morphogenesis biological_process
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008624 True 1877 mRNA 0.48 7 6651424 6659244

Neighbor

gene id symbol gene type direction distance location
AMCG00008625 NA coding downstream 51163 6591233 ~ 6600261 (-)
AMCG00008621 NA coding downstream 95125 6520531 ~ 6556299 (-)
AMCG00008622 NA coding downstream 180691 6415940 ~ 6470733 (-)
AMCG00008620 NA coding downstream 254402 6391144 ~ 6397022 (-)
AMCG00008613 NA coding downstream 274768 6373524 ~ 6376656 (-)
AMCG00008623 NA coding upstream 7619 6666863 ~ 6674622 (-)
AMCG00008628 ndufb7,ndub7,LOC106591659 coding upstream 56865 6716109 ~ 6719084 (-)
AMCG00008627 LOC108442223,LOC107594236,LOC107703743,LOC103374416,LOC100702196 coding upstream 61338 6720582 ~ 6742229 (-)
AMCG00008631 LOC107580959 coding upstream 139519 6798763 ~ 6804508 (-)
AMCG00008630 samd1,LOC108442215,LOC100700176 coding upstream 160720 6819964 ~ 6829699 (-)
G50372 NA non-coding downstream 81 6647011 ~ 6651343 (-)
G50361 NA non-coding downstream 24399 6626109 ~ 6627025 (-)
G50337 LOC104962440 non-coding downstream 308460 6342676 ~ 6342964 (-)
G50268 NA non-coding downstream 709897 5941195 ~ 5941527 (-)
G50126 NA non-coding downstream 1821803 4820240 ~ 4829621 (-)
G50381 tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378 non-coding upstream 33562 6692806 ~ 6706289 (-)
G50435 NA non-coding upstream 244833 6904077 ~ 6904389 (-)
G50437 NA non-coding upstream 246096 6905340 ~ 6905577 (-)
G50496 NA non-coding upstream 707381 7366625 ~ 7366930 (-)
G50514 NA non-coding upstream 719794 7379038 ~ 7379487 (-)
G50267 LOC107575789 other downstream 765974 5748890 ~ 5885450 (-)
AMCG00008608 NA other downstream 857429 5786620 ~ 5793995 (-)
AMCG00008609 NA other downstream 865096 5655689 ~ 5786328 (-)
AMCG00008602 NA other downstream 1041095 5587075 ~ 5610329 (-)
AMCG00008554 NA other downstream 2780155 3430814 ~ 3871269 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 179833 6839077 ~ 6885687 (-)
AMCG00008634 NA other upstream 261463 6920707 ~ 6933089 (-)
G50476 NA other upstream 288645 6947889 ~ 7151472 (-)
G50602 NA other upstream 1242091 7901335 ~ 7902606 (-)
G50656 NA other upstream 1475337 8134581 ~ 8135414 (-)

Expression


Co-expression Network