AMCG00008626 (tecr,LOC107573605,LOC107703756,LOC107694603)


Basic Information

Item Value
gene id AMCG00008626
gene name tecr,LOC107573605,LOC107703756,LOC107694603
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6692745 ~ 6719091 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008626
ATTACATCTTCAGAGTTTAGCTTTCCAACAGCAtgtttcctccctctctctctcttgctcactCAGTTTTCCTTCAGTAACTTGTGCTTGGATTAAGTGGCACTAAAACCCACCCCTTTAGCCTTTTTTGCCCcacctgtttattttctttttttttatgggttGAAACCCTAGCCTTGAACTGTCGCAACCAGAGCCTGTGGAAATAGAGTACTGttcttgtttgattgtttttgtatcTTATTTTGCTGAAACGGTAACCAATGGGAATTTCGTGTTAAGTAAAGCTAGGGTTTCATTTTAGCACCTGCAAAAACTGCTGTGGTGAGAGTTTCTCATTGCAGTGCAAGAATCAGTTCAGACGACAGACCACCCCAAAAGTTGTGAATAATGGATATAAATTCAATAGCGTTAGAAGCTCAGGCACCGAAGAAGGCCAATGGATCACCAGCAGTCGTGCCTGCTAAACGCCCAGCCAAGCCAGCCAAAAAGACTAaaaaagctgttgttttttttgagGTGGAGATCTTGGATGCCAAGACCAAGGATAAGCTATGTTTCCTGGACAAGGTCGAGCCCAATGCAACCATTGGGGAAATAAAGGGAATGTTTCATAAATCCCATCCCCAGTGGTATCCAGCTCGACAGTCCATTAGACTTGATCCCAAAGGCAAGTCTCTGAAGGATGAAGACATCTTACAGAACCTCCCCGTGGGGACCACTGCAACTCTTTATTTCAGGGATCTTGGTGCCCAGATCAGCTGGGTAACGGTGTTCCTGACCGAGTACGCTGGACCTCTTCTCATCTACCTTATGTTCTACTTCAGGGTTCCTTTCATCTACCACCCTAAATATGACTTCACCACCAGCAAGCACTGGGTTGTTCATCTAGCTTGCATGTGTCACTCCTTCCATTATGTGAAGAGATTGCTGGAGACATTGTTTGTGCATCGATTTTCCCATGGTACCATGCCGCTGAGGAACATCTTTAAGaacTGTACTTACTACTGGGGTTTTGCAGCATGGATGGCCTACTATATAAACCACCCCCTCTACACACCACCTGtttatgGAGAACAGCAAGTGAAGATGGCTCTCATTATATTCCTGtTCTGTCAGGTCGGAAACTTTTCCATTCACATTGCGCTAAGAAACCTTCGACCACCAGGTTCTAAGACCCGGAAGATTCCTTTCCCCACAAAGAATCCATTCACATGGCTTTTCTTACTTGTGTCCTGTCCCAATTATACCTATGAGTTGGGTTCTTGGCTGGGTTTCACCGTAATGACACAATGTCTGCCTGTGGCTTTCTTCACCCTGGTGGGCTTCATCCAGATGACTGTGTGGGCCAAGGGCAAGCATCGCAGCTACCTGAAGGAGTTCCGGGACTACCCGCCTCTGCGCTCGCCAATCCTGCCCTTCCTTCTGTGAACTTGACAAAAGGCGACACTACAGGAGAACGCCAGCCCCCTCTGGCTGCAGCTGGAAGGAACCCCAACCATAAAAAGGGGTCGGTTTGGGGAAGGTCTAAACagagtgataataataatcttaataatagTACTAATAAGCATAATGCAACTCAAAACACCTTCAAAGGATTCTGGATATTGGTTCAACTGTTGGGTTCAATTGGTGCATGGAACAAATCTGGGGTCGGGGGGCAAGTTAAGAATCAAGGAATTTTTACAATTTTgtgatggatttatttttaaatgtctgtgtcATCAATTCACAACTAATCACTTGCTTTTTTGCTTATTGAAGTCTTGGatgtcaaaaatataataagaacaatatATGTTCTTCATTAAAAGAACATATTACAATGATTACCCCAAAAAGTCTGTAtaactttaatttttaaattagtttatttatttatgcccCTTGTTTTAGTctgtcaattaaaaacaaatgttcttcCTTGTCTGTGGAGATGCTCAACAGAACAGTTAAGATTTCTGATGTTTAACAACATGtataaaaaaggtttaaaatcgTTAATCATGATGCCAAAATGTACGATACTGGTATCCTATTTGTTCAGTAAAATGGAAGATGAATCATCATCCGTGCACAGTACTGCAATTCCTGGTAATGATCtaccaatttaatttaacttcaaCCTGTATAAAACACGTTTTTGATCATTTAACTAAAACGCTCTTTATAATCTTAAAACATAGGTTTgtatgaaaacaatgtatttccatTATTAATAGATAATGTAATACGTTTTATGAAATTAGCTCATTAAGTTTTAAGCTTATTATAGCAGCCGTTGAAACTGCAATATTTTTGGTACATAATTACTACTGTAAAATGGTTTGAGTTATACAGTGCTAAATATTAAGACATCTTTAAGGCCATTCAAGTaatgcaatacatatttaaaacaaatcctacCATTCTGGAGAAATGTTGTAActaatgttttcaaaaacagGGACGCTATATGTGAACATGTGAAGCCACATGACTCTTCAAAGTGTAGCTTCTATTTGAAGCAGCTGCTGCTTTTAAGAATGGATGGTTAAAGTTGAATGATCATTTTAAACGATGGAAATAAAAGTATGGGTCTGTACAAGGGATTTGATCAGAATGTTTCCGATATAAAGTGCAAACCTTTGCTTTCCCTACTTAAGTGGACAAGAGATGTAAAGCCGTTCAAATGAGGTGGTGCTATATTGGACGTTAGAAGTCAAGATAGAAGAATGTTGATGGATATGGGAAAACACCAGGGCTAGATTGATGTGCAGAATTGAAAGACTCCATTTATTCCTCATAGGGCTTTTTTCTCATGCAAGCATTTTCTTTGAACTGAATTTGTAGTAGGATTTTCCTTCTTCAAAGAGACTAGTGTACATGGTATACACCTGAGAGTTGTTAAGGCAATGCACTATTAGTACCAATGCCATATCACTACATAGCAGTAGCTCTGTAAAAAGTCAGTCTTTAAATTCATTCACAGCTGACATTATACCTGCACTGTATATCAATCAAAAGGAAGTCAGGAGCATTCCTCTCCGTTTCACCAAGAGCACAAAGGGACATGTTAAAGCAAATGTGACCAACATCACCATGGCATGGGAATTGGTGGGGCATGTATGACCTTCACAGGATTTTGAGTTGCATTATCCCTGGAAAAAGTATAGAAACTTACTCATCTCGTTAAAATCGTCTTGTCTTTTCATACTACTGCTGTGGAAATTGCAGCCTAGGGTATTGCAAGTCTGCAGCAACCCTGTCTCTGTAATACTCTCTAGCACGTGGTCATAAATGTGAGAAAAATGTTAACAATGGCAGGTCTCAGTTTTCTAATTAAACCAGTTATATGATGAAAAggtttttttgtggttttaaatgaaGTTAAAACAATCATATGAATAACCGTGGAGTATGTTAATGTACTAATTTATATAGCTTTAATTTctgatttgtctttttctttgaaTCAGTAGctcattttcttgtttatgaaTGAAATTGTTTACAAAACAGTCTGAATACACTGAATGCTGACACTTCCTGTGTTCTAGAATTTTTTTTCTGGTACCAAAATGTGGTCTTTTACTTATGACTtaatggttttccttttttaaataagcaaataatgCACATACCTTATCACACTAATAATCCTGTGTAATATTCTATAGCTAGTGCAGAAGGCAGGTAACAAATAGGAAAAGTTCAAAATCTGACATGAATTTTGACATACAACGCTCAAAGATGCCAATAAGAAAAAAGGGAACTGagaaaaatggaaaaggttatattcttaaaatgaagtggattataaaataatattccaCATAGATGTATCCTCCtaaaaaataaaggcaaaagAGGCATCTAGTGAAATGCAACTGCAGAAGATGAAAATACAAGAGCAGATGCAAAGGTTATGTGACAAGAGTTACTGAAACAATCCAATAAGCCAGTACACATTACTCCTCTTTAAATATTCAGATTATCACTGAAGTTAACCAGACGGGTATGGAAGAAAAGAACTCCATCGAATGGtagttttttatttcagtgaatatgtatgtacataaaaGGGCTCCATTGTTATGCTGTGAGCAGTCACTTCCCTGGAGTTTGGATCAGGCAGCCTGGGCTTCCTCTATCCTCTTCTTCCTCATCAGCAGCCGTCTCTCTCGCTCAAACTCCTTCATCCTCATTACATAGCTGCagGCTGACAGTAATCCCAATCATGACGCTCATGCTTGCAGGCCAGGAAGTTGGGCCAGTTATCTCTTTTGCACTTCATCAGCTTCAGGAGATGGTGAGCGCAGTAATCCCGCTGCTCCACAGGTAACTGGGCTTCATTCATCTGCTGCTGAGTTGCTATCATCACTACACTCACACAACAGCCAAAGCCTAAATCGGAGGGGAAACCTGCGGGTTTCAGAGGGTCCGGTTCGGTGTCCGAATTGGTCACATACCGGCGGGCGAGATGAGCTCCCATGGCGGTGGAGAGGCTCTCAGACCTAGCCTGTTAGTGCCCTGCTGTCTCTCACATAAACACCGCACACCACTTTATGTTTCTTCTCCGGTTTTGTGGGTGACCTCCACTGTCCCTGCACAAAGCACAGCAAGCCCTTCCGCTTCCGGGTCAG

Function

symbol description
tecr Enables very-long-chain enoyl-CoA reductase activity. Involved in fatty acid elongation; sphingolipid metabolic process; and very long-chain fatty acid biosynthetic process. Located in endoplasmic reticulum. Is integral component of endoplasmic reticulum membrane. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
PREDICTED: very-long-chain enoyl-CoA reductase isoform X1

GO: NA

KEGG:

id description
K10258 TER, TSC13, CER10; very-long-chain enoyl-CoA reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008626 True 4628 mRNA 0.40 13 6692745 6719091

Neighbor

gene id symbol gene type direction distance location
AMCG00008619 NA coding upstream 329715 6305726 ~ 6363030 (+)
AMCG00008618 NA coding upstream 484994 6188494 ~ 6207751 (+)
AMCG00008617 NA coding upstream 573393 6108963 ~ 6119352 (+)
AMCG00008616 NA coding upstream 646875 6030847 ~ 6045870 (+)
AMCG00008604 NA coding upstream 809697 5881993 ~ 5883048 (+)
AMCG00008629 NA coding downstream 28620 6747711 ~ 6748885 (+)
AMCG00008641 NA coding downstream 635174 7354265 ~ 7354886 (+)
AMCG00008640 NA coding downstream 652937 7372028 ~ 7376143 (+)
AMCG00008645 gdf11 coding downstream 696708 7415799 ~ 7416230 (+)
AMCG00008643 gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665 coding downstream 768079 7487170 ~ 7496005 (+)
G50367 NA non-coding upstream 41406 6646950 ~ 6651339 (+)
G50362 NA non-coding upstream 63099 6629438 ~ 6629646 (+)
G50346 NA non-coding upstream 174154 6490657 ~ 6518591 (+)
G50342 NA non-coding upstream 317711 6374665 ~ 6375034 (+)
G50340 NA non-coding upstream 319834 6372432 ~ 6372911 (+)
G50450 NA non-coding downstream 303370 7022461 ~ 7166940 (+)
G50451 NA non-coding downstream 321830 7040921 ~ 7050362 (+)
G50458 NA non-coding downstream 493655 7212746 ~ 7219181 (+)
G50459 NA non-coding downstream 501649 7220740 ~ 7222856 (+)
G50461 NA non-coding downstream 514329 7233420 ~ 7248042 (+)
G50243 NA other upstream 949995 5738541 ~ 5742750 (+)
G50215 NA other upstream 1095946 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 2119871 4561991 ~ 4572874 (+)
G49982 NA other upstream 2527262 4162058 ~ 4165483 (+)
G49980 NA other upstream 2532683 4156088 ~ 4160062 (+)
G50448 NA other downstream 238520 6957611 ~ 7018125 (+)
AMCG00008639 NA other downstream 577795 7296886 ~ 7315850 (+)
G50583 NA other downstream 1214738 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 1559762 8278853 ~ 8324778 (+)
G50747 NA other downstream 1731075 8450166 ~ 8666548 (+)

Expression


Co-expression Network