AMCG00008627 (LOC108442223,LOC107594236,LOC107703743,LOC103374416,LOC100702196)


Basic Information

Item Value
gene id AMCG00008627
gene name LOC108442223,LOC107594236,LOC107703743,LOC103374416,LOC100702196
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6720582 ~ 6742229 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008627
ATGACCCATTCGCTTTTGTTGATGTTGCCGCACCGGGATCTGGAAAAACGTGCGTCTGAGGCAGAAGCGCTGACACGAGATCCGCCCGGGAGTCAGTCCAGCACCTGCGCGCTGAACCACCTCGACGCGCCGACGCGGGGAGAAAACCAGCACAGCCGGCGCCCAGACCAGTGCCCAGACCAGCGCCCAGACCAGCCCTCAGACCAGCCCCCAGACCAGCGCTCAGACCAGCGCCCAGACCAGCGCTCAGACCAGCGCCCAGACCAGCGCCGAATCACCGCTCAGACTGCCCGCCATGTCAGCGTCAGGAGGGGAGGAGAAGATTACTCCACTGCCATCCTGAAACAGAAGCATCGTCCAAACCGTCTCATTGTCGATGAAGCCCTCAATGAAGACAACAGCATTGTCTGCCTGTCACAGGCTAAGATGGAGGAGCTACAGCTATTCCGGGGTGACACGGTTCTTCTGAAGGGAAAGAAACGCAGGCAGACGGTCTGTATTGTCCTGACTGATGACACCTGTGCCGAGGAGAGGGTGCGGATGAATCGTGTTACTCGGAACAACCTGCGCGTACGTCTGGGTGACATCATCAGtataCAGGCCTGCCCAGATGTGAAATATGGTAAAAGGATTCACGTGTTGCCCATTGACGAGACCATCGAGGGGCTTTCTGGCAATCTCTTTGAGGTTTTTCTGAAGCCTTATTTTTTGGAAGCATACAGGCCTGTGCACAAAGATGATATTTTTCTGGTCCGTGGAGGGATGCGTGCTGTGGAGTTCAAAGTTGTTGAAACAGACccttcccctcactgtattgtcGCCCCAGACACCATCATTCACTGTGAGGGAGAACCTATTAAGCGCGAGGATGAGGAAGAAAGCCTGAATGACATTGGCTATGATGACATCGGTGGGTGCAGGAAGCAGCTGGCTCAGATCAAGGAGATGGTGGAGCTTCCTCTCCGACACCCTGCACTTTTTAAAGCCATCGGTGTAAAGCCCCCTCGAGGGATTTTACTCTATGGCCCACCTGGGACAGGTAAAACCCTTGTAGCTCGTGCTGTAGCCAATGAGACAGGGGCATTCTTCTTTCTAATCAATGGGCCAGAGATCATGAGTAAGCTGGCAGGGGAGTCAGAGAGCAACCTGCGGAAAGCTTTTGAGGAAGCGGAGAAGAATGCCCCAGCAATCATATTCATTGATGAGCTGGATGCCATTGCACCCAAAAGAGAGAAGACTCACGGAGAGGTGGAGCGTAGGATCGTGTCTCAGCTCCTCACTCTGATGGATGGTCTCAAGCAGCGCATTCATGTTGTCGTCATGGCCGCCACAAACAGGCCGAACAGTGTTGACCCAGCACTCCGACGATTCGGACGGTTTGACAGAGAGATTGACATTGGGATCCCTGATTCTACTGGTCGGTTGGAGATTCTGCAAATTCATACCAAGAACATGAAGCTGTCTGATGACGTGGACTTGGAGAAAATTGCCACCGAGACTCATGGACATGTGGGTGCAGACCTGGCTGCACTCTGCTCTGAAGCTGCCTTGCAAGCCATTCGCAAGAAGATGATCCTGATTGACCTTGAGGATGAGACAATTGACGCGGATGTGCTTAACTCACTGGCCGTCACCATGGATGACTTTAGGtATCCTGTGGAGTACCCAGACAAGTTCCTGAAATTTGGGATGACCCCATCTCGTGGTGTTCTGTTCTATGGCCCCCCAGGTTGTGGCAAGACGCTCTTGGCGAAAGCCATCGCTAATGAGTGCCAAGCTAACTTTGTGTCCGTCAAGGGTCCAGAGCTCCTCACTATGTGGTTTGGGGAGTCTGAGGCCAATGTACGCGATATCTTTGACAAGGCACGACAGGCAGCCCCTTGTATCCTGTTTTTCGATGAGCTGGACTCCATCGCCAAGTCCCGAGGAGGAGGTGTGGGAGATGGAGGAGGGGCAGCTGACCGAGTCATCAACCAGATCCTGACCGAAATGGATGGCATGACAAACAAGAAGAATGTTTTCATCATAGGGGCCACCAACAGGCCTGACATCATTGATGCAGCAATCCTGAGGCCAGGGAGGCTGGACCAGTTGATTTACATCCCCCTGCCTGATGAGCGATCCCGGGTCGCCATCCTCAGAGCCAACCTGCGCAAATCTCCGATTGCCCGGGATGTGGATCTGAATTACTTGGCGAAGATCACAGACGGCTTCTCAGGAGCAGACCTCACTGAGATCTGTCAGCGTGCCTGTAAACTGGCCATTCGAGAGGCCATAGAGGCAGAGATCCGAGCAGAGCGAGAAAGGCAAAACCGTACCGATATGGCTATGGATGAAGACTCTGACCCTGTTCCCGAGATCAGGCGCGATCATTTTGAGGAGGCAATGAAATTTGCCCGGCGCTCCGTCAGTGACAACGACATCCGCAAGTATGAGATGTTTGCACAAACTCTGCAGCAGAGCCGAGGCTTTGGGAACTTCAGGTTCCCTTCTGCATCGCAGTCCAGTGGAGGGGGGCGAGGGTCGGGACAGGGGGGAAATGACCCAGGAAACCTCTACAGAGATGAAGGAGATGACCTCTATCAATGACCTGTGGGGCTTCAGAAACTATCCAGTCACTATTCATGACTGGACCTGTGCTCTTTGGATCTGTACTAAAAAGGTCTGCGGTTTGGATTTCTAGAGTGTGAGATTTGCAGTATAAAGCAGGAGCCGCATATATATTATCCTGTGTTCTTTTGTAGTTTCTGCTATAATAAAGCTTAGCCCACCCAAAAAATCTGAATCAAAACAGCATtgcatttgtatgtttgtttgtttttttaataatttgaagatgtcattattatatttactgaAGTTATAAACAGAGGCTGAacacaagtaaataaacagCCAGATATGAAAATAACTTTGGTTTATTCTGGAACCATACGTTGTGCTGCCTGTGTATGTAGGGTAAAAAACGGTGCTGTTGCTCTTTGCTAAATGTGAAGCAGTAACATACTGATATGTTGTGTGGTGGCAGCCCCTTGTATGTGAAGTCACGCCCCATTTCTACACCGTCTGTATGACAAAGACAAAGATTGCATCTATGTGTGCATGGAGATTGACATTCAAATGTGATTCTGTTCCCACTGGTACTGAGAGAGCATATAAGTACCATTAGCTCTTAAACTACTGTATTCTCTTCTGTACAAAGATACAGATCCTTGACATTTTATTgagctattattttattttattttgtaagttctAGAAAATACCAGCTAAGAAAGTACACATTTATTGTATAGCTTTAGTAGAGCTTAAAGAACAACTatgcaacattaacaaaataaaattcagtCTTTATTAATAAGCAATGGTAACAGTTGTTAAGAGATATGTGTGAGTAAATTGTACATGATAGTCAATTGTAATGCAGAAAGGTCAGTGGACATTTGACATTAAAAGAGCTATTTACATCA

Function

NR:

description
PREDICTED: transitional endoplasmic reticulum ATPase-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008627 True 3470 mRNA 0.49 17 6720582 6742229

Neighbor

gene id symbol gene type direction distance location
AMCG00008628 ndufb7,ndub7,LOC106591659 coding downstream 1498 6716109 ~ 6719084 (-)
AMCG00008623 NA coding downstream 45960 6666863 ~ 6674622 (-)
AMCG00008624 gipc1,LOC103468782,LOC102231162,LOC107711205,LOC106606841 coding downstream 61338 6651424 ~ 6659244 (-)
AMCG00008625 NA coding downstream 120321 6591233 ~ 6600261 (-)
AMCG00008621 NA coding downstream 164283 6520531 ~ 6556299 (-)
AMCG00008631 LOC107580959 coding upstream 56534 6798763 ~ 6804508 (-)
AMCG00008630 samd1,LOC108442215,LOC100700176 coding upstream 77735 6819964 ~ 6829699 (-)
AMCG00008632 asf1b,asf1bb,LOC103026007,LOC107599302,LOC108429686,LOC101069596 coding upstream 166545 6908774 ~ 6915444 (-)
AMCG00008635 NA coding upstream 257325 6999554 ~ 7009561 (-)
AMCG00008636 NA coding upstream 471440 7213669 ~ 7276093 (-)
G50381 tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378 non-coding downstream 14293 6692806 ~ 6706289 (-)
G50372 NA non-coding downstream 69239 6647011 ~ 6651343 (-)
G50361 NA non-coding downstream 93557 6626109 ~ 6627025 (-)
G50337 LOC104962440 non-coding downstream 377618 6342676 ~ 6342964 (-)
G50268 NA non-coding downstream 779055 5941195 ~ 5941527 (-)
G50435 NA non-coding upstream 161848 6904077 ~ 6904389 (-)
G50437 NA non-coding upstream 163111 6905340 ~ 6905577 (-)
G50496 NA non-coding upstream 624396 7366625 ~ 7366930 (-)
G50514 NA non-coding upstream 636809 7379038 ~ 7379487 (-)
G50557 NA non-coding upstream 911851 7654080 ~ 7657391 (-)
G50267 LOC107575789 other downstream 835132 5748890 ~ 5885450 (-)
AMCG00008608 NA other downstream 926587 5786620 ~ 5793995 (-)
AMCG00008609 NA other downstream 934254 5655689 ~ 5786328 (-)
AMCG00008602 NA other downstream 1110253 5587075 ~ 5610329 (-)
AMCG00008554 NA other downstream 2849313 3430814 ~ 3871269 (-)
AMCG00008633 prkaca,LOC108429687 other upstream 96848 6839077 ~ 6885687 (-)
AMCG00008634 NA other upstream 178478 6920707 ~ 6933089 (-)
G50476 NA other upstream 205660 6947889 ~ 7151472 (-)
G50602 NA other upstream 1159106 7901335 ~ 7902606 (-)
G50656 NA other upstream 1392352 8134581 ~ 8135414 (-)

Expression


Co-expression Network