AMCG00008638 (tubb4b,tubb2b,LOC107587400,LOC107393497,LOC104942712,LOC103024068,LOC107717448)


Basic Information

Item Value
gene id AMCG00008638
gene name tubb4b,tubb2b,LOC107587400,LOC107393497,LOC104942712,LOC103024068,LOC107717448
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7341434 ~ 7342284 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008638
ttCTGGGAAGTTATCAGTGATGAACATGGTATTGACCCAACAGGAACTTACCATGGGGACAGCGATCTTCAGCTTGAGAGGATTAGTGTCTATTACAATGAAGCCACAGGTGGTAAATATGTCCCAAGGGCAATCCTTGTGGATCTGGAACCAGGTACCATGGATTCTGTGAGGTCGGGACCATTTGGTCAGATCTTTAGGCCTgataattttgtattt

Function

symbol description
tubb4b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within cilium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in Leber congenital amaurosis with early-onset deafness; hypomyelinating leukodystrophy 6; and torsion dystonia 4. Orthologous to several human genes including TUBB4B (tubulin beta 4B class IVb).
tubb2b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 7. Orthologous to human TUBB2B (tubulin beta 2B class IIb).

NR:

description
PREDICTED: tubulin beta-4B chain-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008638 True 219 mRNA 0.44 2 7341434 7342284

Neighbor

gene id symbol gene type direction distance location
AMCG00008637 NA coding downstream 3585 7316126 ~ 7337849 (-)
AMCG00008636 NA coding downstream 65341 7213669 ~ 7276093 (-)
AMCG00008635 NA coding downstream 331873 6999554 ~ 7009561 (-)
AMCG00008632 asf1b,asf1bb,LOC103026007,LOC107599302,LOC108429686,LOC101069596 coding downstream 425990 6908774 ~ 6915444 (-)
AMCG00008630 samd1,LOC108442215,LOC100700176 coding downstream 511735 6819964 ~ 6829699 (-)
AMCG00008642 ccnt1,ccnt2,LOC102787965 coding upstream 44768 7387052 ~ 7402820 (-)
AMCG00008647 gdf11 coding upstream 92036 7434320 ~ 7517842 (-)
AMCG00008646 NA coding upstream 185265 7527549 ~ 7542887 (-)
AMCG00008650 tmbim6 coding upstream 385815 7728099 ~ 7746304 (-)
AMCG00008655 NA coding upstream 476867 7819151 ~ 7861536 (-)
G50437 NA non-coding downstream 435857 6905340 ~ 6905577 (-)
G50435 NA non-coding downstream 437045 6904077 ~ 6904389 (-)
G50381 tecr,LOC107703756,LOC107573605,LOC107594239,LOC107390378 non-coding downstream 635145 6692806 ~ 6706289 (-)
G50372 NA non-coding downstream 690091 6647011 ~ 6651343 (-)
G50361 NA non-coding downstream 714409 6626109 ~ 6627025 (-)
G50496 NA non-coding upstream 24341 7366625 ~ 7366930 (-)
G50514 NA non-coding upstream 36754 7379038 ~ 7379487 (-)
G50557 NA non-coding upstream 311796 7654080 ~ 7657391 (-)
G50558 NA non-coding upstream 319868 7662152 ~ 7662442 (-)
G50560 NA non-coding upstream 326564 7668848 ~ 7676186 (-)
G50476 NA other downstream 189962 6947889 ~ 7151472 (-)
AMCG00008634 NA other downstream 408345 6920707 ~ 6933089 (-)
AMCG00008633 prkaca,LOC108429687 other downstream 455747 6839077 ~ 6885687 (-)
G50267 LOC107575789 other downstream 1455984 5748890 ~ 5885450 (-)
G50602 NA other upstream 559051 7901335 ~ 7902606 (-)
G50656 NA other upstream 792297 8134581 ~ 8135414 (-)
AMCG00008662 NA other upstream 840645 8182929 ~ 8190177 (-)
G50710 NA other upstream 926739 8269023 ~ 8269326 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other upstream 928040 8270324 ~ 8294354 (-)

Expression


Co-expression Network