AMCG00008648


Basic Information

Item Value
gene id AMCG00008648
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7622630 ~ 7669344 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008648
GTGATGATGTCTGAGGAGGCTGAAGAGAGACCGTGCAGTGAGGCCTTTGATCCAGACGAGGGAGATGAAGAGCCGTTTGAGGAGGGCCTGGAGGTAGAGAGCAGCAGGGAGCTGTTGGAGAGGCTgagagagctggagGTGGAGAACTCTGCCCTAGCCCTGGCGAACGAGAGTCAGAGGGAAGCGTACGAGAGGTGTTTGGATGAGGCAATCAGCCAGAATAATCTGCCAACAGAGCCCTTGTTGGAGCATAGCACTGGCCCCGGCCTACTCTCAGACTCCAACAAACCAGAGGAGACCCACACTGAAGCACAGACAAAGGGTAACGGGGAACGTACACGCAATGGCACTCCAGGAACCAGAACTCCGGGCACGTCCATGGAGGCACTCTCTCCTTTCTTCAAGAAGAAAGCACACATTTTGGAGGTGCTGCGGAAGCTGGAGGAGAACGACCCACTGAAATTCCATCCCTCGACAGGGCTCTCCTCCTACCGAGATTTGGGGCAGGTGCTGGCACCCACAGAGTCGATCGTCCCAGGGGAATACCCCCTGCAGCTCAAAGCCCCCGAGACAGATCGGCGCTCCAGTGCAGATTCGGATATCCACGATTACATGAATGGGGAAGGGGCTCTTCCTGAGGACAACGGGCTTGACTATGAGAGTTGTCAGTCTTGCCTAGTGTTCTCACAGAAAAGTCTCGATGGCCTGTTTAAGTGGAAACAGGACAATAGTGTAAGCCTCACCAAAGGGGAAAATGTGAATGGCCTTGATTGCAAAGAAACTGTGGTATCTGTGCCAGACTCCATGACTGCCCAGCTAGCTGTTAGCACAAGCGAACTTTGCACACACAGCACCCCAGCTGAAAAGATGTCGTCGAATTTTCCTTCTGAACCAAGGAATGAGAAACCTAATGACCTTGCACAATTTTTGGGCAATGAAACTTACCTCTTCTCATTAATCAAAGACACTGATCAAAATTGCTCCATGAATGGAGATCCAGAGGAGCCCTTGCCATTAGACGAGGAAATCCATGGTCCCTGTGATGCAAATTTCTGCAACAAGGTCCCTGGTGCTAATCTTCCCTTGCAGTGTCAATCCCTGCAAAGGGAAAATGGTGATCTTACTCCAAAAGAGAATCTGAAGCACACAAAAACTGTGGCCTACCAGAACTTGAGCGCAGGTCAGGTGATTGGCACAGAGGAGCATTACATCAAACTGGAGGCCTACAGCACGACAGAAGCAGTGAACGTGAAAAACAGCTTGTACACCACTACCTCAAATCTGACTATTCCTGGAGTTCCAGACAGGTCTCAAATTGCATACTGTGAGCAAGAATCCACAGAACAGATATGTAATGGTTTGTACTTCTCGAACGAAACCTGCTTTTCCAAAAAAGTTGCCGTGGACTCCTATTTGCCCGTAAACACACTCGAGAAGAACCATGTCTCCGTGCAGCAGCAGGCTCCTCAGGGGAAAGCCAAACTTGCGCTGAGCCCCACCTCCCCTTCTTGCTTAACAGATGCTAAGGCCTCTCCCATCTCTTCCCCCTCAAGACTGCTCAAATTCCTAAAAATACCCTCCATAGGTGAGCGGGCACAAGCGGCCAACCCTCTCCGCCTTAGCCCTCAGCTCACCCGCAGTTCCAAGATCCCCTGCCGGAACAACAACTATGAGGTGTACCACTCACCTGTCACACCCAGAAAAGCTGCCAcagctgagagagacagacaaacgCCTCCCTCCAAGAGTGACTCCTACCCTGCTACACATTCAGCACCTACTTCCCCTCCGAAGCCCGAGGATGCCTTGCCCTTGCAGAAAGAGCCCAGCTACAGTAGCCACTCTGCACCCAAACCCAGCAAGAATGCCAAGCTGACACCTTCAGGGCAACAACACAAAGGCTTTCAAAAGGTGCCCCACTATGAGAATGTGTCCGAACTCTCCACTGGCTGCCAGGCTGATGGATCTGCACAATTCGTTGAAAGGGTGAACCAAACCAAGTTTCCGTCCTATTTGCATGAAGGTCAATCTGAAAAGCAGATTATCTGTCCTGAGGATAAATTAATCAGCCCCATTCACAAACAGTCCCACTTGTCTTGTGGGACTCAGTTGATGCTTTTACCTGACCCATCTTGTGAAACAGCATCCCCTGATCAAGACGCATATTCTGAGAATCCTGGCTGGTACAAACTCCATGATCACCACAGCTTGCCCAACTCCTCGGTCATTCACAAATCTCAAAGCAGCTGCCTCTATTCTAGCACGAAGGACAGGCAGCATGACAGAGGCACTCCAGATGTTGCCCAACAGACCTCTGAATCGACCCAACCTTCTGCTCTTTCTAAGAAAGGCGAGCCTCCCTCCATTCCCAAAAAGCCAGTTAGTGGGAAACCTCCAACTGAATCCAGCCACCTTCCATTTAAAGAACGCTTGGCAGCACTTGGCAAGCTGAAGAGCACCGAAGACTCACCAATTTCTGGTCCGGTTTTGGGGCCCCCCTTAGAAAAGAAAGATGTGCAGTGCAATGGGAAGTTTGCCTCATCAAGCAATAATGAAAGAAGCAAAACTGCAGAAAGGCAAGGGGATCGTAATGGCGTGGATCACAGACACTCAAAATACACAGATTCTCTTGATGGGAAGCCTTACTCCAAAGCCAACCTTGGCAGCTATGGCCTGAAGATCCCAGGTCCTTGCCTACCTTATGAACCTGGAGCCAAATCTTTACCTCCCAACTTTCCAAGCCCCAAAGCAGAGCTGGAGAGTTTCTCTTCCAGAATTTATGTAGCAAAGGCAGATGGCCCAAAGATCAAAGGTGGCTTGCCTTCCTCAAACTCTGATCCACCTCAAGTTTTGCGCAACTACATGAAATGTACAAACACTCAGAGTCCTCCCTATAATGGTAAAACTATTCCAAGCCCCCAGGGCAGCCCCACCAAGGTTCCATCCAAATCTCCTTCTAAACCCAGCCAAGCTTCTTCCAGCGTCAAAGGGCCCAAACCAGCTCAGGAAGATCGTTCCACTTCCCAGAAACATTCTCCAAGAGCAGAGGACAAGAGCAAGCTGCCTGCCAACAGGAAGAAGAACGCTGTTTACTCCGACAGTCTCCCTCCGCCACCACCACGGCCTGATGTCAATGCAGACAAGAGACCCCTTGTGCCAAGTGCTCAATCAGCTATTGAGCAAAAggtcatgaagggcattgaggAGAATATGCTGAAGCTGCAGGAACAGGATCGGGGCCTGGGGGCTGAGGTCAAACAAAAGGCTTCCAATGGCATTGCCAGCTGGTTTGGCCTGAAGAAAAGCAAGCTGCCAGCTCTCAACCGTAAACCAGACATGGTCAAACTCAAAGAGGACAAGAAGGAGTGGAAGCTCAACATGTCCTCCATGGGTAAAGATCCTAAAACAGCCACAAAGAAGAAGCTAGAAGTAGAGAGCTTAAATATCTCCAAATTGATGGAGAAGGCTGAGGATTTGCGCAGGGCCCTGGAGGAGGAGCGGGCCTATGTCAATGGAGTGGCCCTAGATAGGCCCAGCCGGGGCCACTCCTGTGAGGTGGTGATGGATCAGAGTCAAAGTCAGCTCTCAGTCATGTACAGGGAGtccttgtttttctccaggGTGGATGAGAGGGACACCAGCAGTAATGGTCTGGCTCACCGGCGCCTGTCCTTTGACTCCAAGAAGTCCAGGCCTGTTTTCTGCTCCCCAAGGAATGGCATCATCAGCCATGGCAAGAGCAGAGAGGAAGTGGAGAAGGCTACAGAACTCATCAGCAAAGATGACATCACATCGGTTGAGAGTCTAGCCGAGTCTGTAAACTCCCAGCACTTTGCAGGGTCCGGCTCCTCAACCAGGACACTCGACAGTGGGATCGGCACATTTCCTCTTCCTGACTACGCTGGCAGCGCCTCAGGGAAAAGCATCCCCAAGGTGAGGCCCCGGGGGGAATATGAATGCTGTGCCGCCCTGGGGAAACCCAGCCCAGGGACAAAGGTTCCGCGCAAAGCCAGGACTCTGGAGAGGGAGCTATCCTCGCTGGAGGAGGCATTTTCCAGGGACAAGGAGCTGAGTCCTGGGCTTTACAGCTCTCCTCTGGAGGGCAGGGGCTCCAGTACACACATCTCCGGCACCATCCATGAAGATGTGGATCCCTACAGAGCTCACGTTCGATCTCCTTCATCCAAGAACTGGACCTTCCCCAATCTGAAAGCTTCTAGTGGGTCAACCGAGGTGTACCTGGGAGTCCGAGGAGAAGTGGAACCAGCCAGCCACGGGACTCCGTTCAGAAGGagtttgaAGCCTTGCCTCCCGCCTCCTTCCCGAGATGCTGACCCCGCCAGCTTGCCCCTGCCTCCCCCACTGGCCTTGGTCCGCCGGGTGAAGTCTCGGACCCCCAGCGCCCCTGAGGTGGGCAAAGAAGGAGGTCTTGAGCTGGTGAAGGAGCGCCCCGATGACGTTCTGTCCCCCAGCCGCCCCTCAGCCCTCGAGACCCCCGAGTCTCTCAGCGACTCGCTGTACGACAGCCTGTCCTCTTGTGGCAGCCAAGGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008648 True 4554 mRNA 0.53 10 7622630 7669344

Neighbor

gene id symbol gene type direction distance location
AMCG00008644 NA coding upstream 69848 7543720 ~ 7552782 (+)
AMCG00008643 gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665 coding upstream 126625 7487170 ~ 7496005 (+)
AMCG00008645 gdf11 coding upstream 206400 7415799 ~ 7416230 (+)
AMCG00008640 NA coding upstream 246487 7372028 ~ 7376143 (+)
AMCG00008641 NA coding upstream 267744 7354265 ~ 7354886 (+)
AMCG00008649 LOC106565510,LOC106583272,LOC108424584 coding downstream 52897 7722241 ~ 7725184 (+)
AMCG00008651 LOC103362051 coding downstream 114264 7783608 ~ 7819242 (+)
AMCG00008652 NA coding downstream 332252 8001596 ~ 8016744 (+)
AMCG00008653 NA coding downstream 352324 8021668 ~ 8036234 (+)
AMCG00008657 NA coding downstream 431251 8100595 ~ 8101654 (+)
G50534 NA non-coding upstream 79780 7532974 ~ 7542850 (+)
G50506 NA non-coding upstream 243124 7379048 ~ 7379506 (+)
G50461 NA non-coding upstream 374588 7233420 ~ 7248042 (+)
G50459 NA non-coding upstream 399774 7220740 ~ 7222856 (+)
G50458 NA non-coding upstream 403449 7212746 ~ 7219181 (+)
G50546 NA non-coding downstream 4797 7674141 ~ 7676185 (+)
G50561 NA non-coding downstream 23592 7692936 ~ 7828902 (+)
G50563 NA non-coding downstream 69851 7739195 ~ 7740429 (+)
G50571 NA non-coding downstream 155539 7824883 ~ 7826540 (+)
G50579 NA non-coding downstream 227509 7896853 ~ 7900191 (+)
AMCG00008639 NA other upstream 306780 7296886 ~ 7315850 (+)
G50448 NA other upstream 604505 6957611 ~ 7018125 (+)
G50243 NA other upstream 1879880 5738541 ~ 5742750 (+)
G50215 NA other upstream 2025831 5596023 ~ 5596799 (+)
AMCG00008580 pnpla6,LOC106564686 other upstream 3049756 4561991 ~ 4572874 (+)
G50583 NA other downstream 264485 7933829 ~ 7939771 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 609509 8278853 ~ 8324778 (+)
G50747 NA other downstream 780822 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1412483 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 1447331 9116675 ~ 9122812 (+)

Expression


Co-expression Network