AMCG00008652


Basic Information

Item Value
gene id AMCG00008652
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8001596 ~ 8016744 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008652
CTGCTCTTCACCGAATAGCAGCCGCGCACAGCGACGGGGAGAGGAGGACAAAAACGCCCTTGTTGTTGAGTAACTCACTCCCACAGCCTGGGCGAGACTGCAGGCTTGCAAACCCCGCGGCGGACTTCGTGGATAGTCGGTGGATTTTAGACACTGTTTGGGGGAGACGTTTGCcgtttaaaacatgtattccgAGGCGGAGAAAGCCGGGACGCCCCGCAAACGCGTCCTGTCTCTGGGGATGAGTGAGGACGAATCTCTGCGACACATCATCAAAGAGGCTGAGGGCTCTGCAAGGCGCCTGTCCCGTGCAGACAGCAGACTGGGCAGGAGGCTGGAGACAGGCCAGCTGACCGAACTGCAAGAGAGCTATGATGAAGCCCTACAGACAGTGCATGCCCTGGAGCTTCAGAGGGAGACCCTGCAGTTTGAGGTGGACTGTTTGCGGGACACCCTGGATGGGGTGGAAGAGCTGCTGGCTGAGGCCCACAGAGAAGGTGGTGACATCAAAATGgagctggagagagagagggagaaaaggagaCAGCTGGAGGCTCAAGTCTGTGCTTTGCAGAATGAGGTGGAGTTGCTGAATAATGAAAATGCACAAATCCCAGCTGTGCCTGTGTACACCTGTCTCGGAGCTGAACAGCAAGAAGGAGAGGAGAATGTGACGGAAGATAGGTGGGAAGACACAATGGAAGACAtagaagaggaagagggggaagcACAGACACAGCAGGAGGAGAACAAAGATGGAGAGGTTGAGGTTATAGAGGTACAGAAGTGGAGAGCACACAGGAAGCCTGCCCCTTCTGGGCCTGTGTTGACTGTCAACCGCTTGGATAGCGAACCAAGCACAAAAGGTACAGAGGGCAAAAACTCGGTGGTGCAGATGGGAAAGGAGAATGGCAGTTCAGCAGGAACATGTGGGGAGGGTGAGAAGAGCGATATTGGTAACCGGTGGGTGGAGACCACTGCCGGTGGAATCTTAGCCAACTTTTTCACCAAAGGGAAGGAGGTGCCCACAGCAGAAGCATCGGAGCCAGATGGCAGTGCATCCTTGACTGAGCAGCAGGAGACCAGAGCCACGCGAGAACCACAGTCACTAGGTTGGGAAGGGGTGTCTGTGGATTCCCATTCAGGATCAGTCCCAGTGGGTTCGGTAGCTCCCCTTTCCGACCATGAGAAAGGGAAAGAAGCCCAAGCCCAGGGAGAAAGTCAAGAAAGCAACTTGGCCAAGTTCCAGAAGATAGTCCACAAGATTATCCCCGGATTACAAGCCGCTACTGAACCCCAGGATGACTCTCGAATCCTCAGGGGTCCCCAGAACACttgcacagagcagagcagcaggCCAACGCAGGAGTCTTCCAATTCAGACACCCCCGTGAAAACGGAGGCCCGCCAGACACTGGAGAAGCTTTTCAATCAGTTCTCCTCTGGACTGGCCTCAAACCAAAATGCAGAAAAGCCCAGCTCGGAATTGGCCACCCCAGCAGAAATCGGGCACGGTGAGGCTGCGGCCCCTTCTGAACCAGGAGAGGAGAACTTGGCCAGGACCGACAGCTCCCTCAGTTTCTCTCGGGAATCCCTGAGCAGAAATGACAGTTCCCAACCCAAGACCCCAGAGTCCTGCATCCTCTCCTGAGCCTCAGTGGCAGagtttcacaaaaacaaaatagattagCTGGAGCAGCCAGACCTGCCTTGCTGTACTCTGGCAACATAGTCGTAAACATGATACTCCTCTCCCCCAGGCAAAGGAACCTACCCTTCTCTGTTTATGATCACGAACTGTGACTGCATACACATATGTGCATCACTGGTTCATAAGTAGCTGTCAGACTATGGACTTGGATAATAGATGTATTGTTCTAACGAGAAAGAGAAGTCTAAATTGGGGCTGTTTggcttatttttaattcttttttgttgttttctaattaGAACTTTTAAGAaatactttctttctttattatagAATGACTGGAATCTGTTCTAGTTTCCATTTCAATTCTGTAATGTGGGACagatgtattgtaaataagTCACACCATGTTGTGAACTATAAGACAAATTTATGTTCTGTTAAAGAGCTCCATTACATGCCAGAAACCTGTAGGGTTTTGAATGAAAGGAAAGCACTGAGGTCTAAGGAAAATCCTAGCTGGCTTCATAATGGAGTAATGTGATCCTAGTAGGTATTCAGGATGCTAGTTATCATTCAGACTGCAGTTCATTGGGTGCATCTTCCCAACACTTTGACCTGTAAGTATGAGTACAGTGAAAAGATTGTGGTATACATCTTGAAATTAAACCTACGTTAGCTGTATTCAATCATATAACTCTATCACATTTGCATAAGATCTCTTTGTTTAAACCTGTGAGGCATAACCGATAGCCACTTTACTCcatcttgttttaatattatagcCTTGAGgctcaaattaatttattttacccaTCAGGAAATAGTTAATGGGccttatatagttttttttttttttcctactgtTGTAGATTGACTGGATCAACAGCAAGCTCCAATCTTATATTTACTgctgcaaaaaacacaaatgacctTGAATTCACCCTTCAACTATCCTGTCACAGGCTCTGTAGATACTCTATGCAGAGAttcaagaaacatttaaaaaaaggggaTATTCTATTCTAAACACTCTGAACGTGCATTTTATagtcctttttcctttttaattttttctttccttgtatAGTTTAACCATTGTCTTTTTGCAGCCTGTTATTAGTGttattacactttattttcttaaagtcAAGGGGTATCTATTAAACCCCATTTACACGTCTAATCGGCACTGGTTAGGCAGAAAGGAGATCTTTGTCACCACACCTTCCAGACAGTAGAATAATCCTGTCCGGAAAATAGCCGTTTGAACTGCTGTAGTTTTTCAACATTGAAGGTACTGTATTACTGATTGTATGAGACACTGGTGGTGATGGATTTTGGGGATCAAAAGTACAGCACAAATTAGACCACTGATTCACTATAGACACTTTAGAATGGATTGAACCTAATGGCTGTTATTGTCAGATGTTTTGAAGCATCAAGGctggtttatttttaagctttgCATCTGGCTGCACACTCTGTCCTGCTCTGTGAAATTTGATTCAGCCTTTGTTTGGAAAGGGATTTCATTGGATGTACCCCTCTAGCGCacttgacatttttgtttcaggATTTTCTGAACACTGTAGTTTAGTAATATTGTTTTTAGCCACATGTGTATACAATCCACACTTGAAATCCTCAATCCACATATTCAGTAGGATGTCTTCAGCACACTTATACGGAGCTTAGCTGGTACTGAGTCTTCTAACACACTGGGTTAAAGACCTTGACTGTAGCAATGTGACCAGTCAagaataaaagtgaaaaaatactaCTGCTTGTagcatagtttaaaaataaataacatgtatcTTTAGATTTGAATTGTATgcataaactgtatttttactaCAGATAtgctgattaaaaaatattatatttctatgtgtctgtgtgtatatgtacaaaGGACTTGTTATTCTATTGTACAGTTAGACtaatttttaaactattttatgaaATTGGGTGTTTACTCTTCATTGGGGATAGTGTTCACTGTACATTTCACATGCTCAAACTACAAATAAACCCATTGACATCAAGTGCTGAATTGAGGTCAGGTAGAGATCGTTGGGGCCGAGCTCTGTCCTTCATCCTTCAATAGGTCAGCAGTAATATGTGCTAATAAGGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008652 True 3793 mRNA 0.45 5 8001596 8016744

Neighbor

gene id symbol gene type direction distance location
AMCG00008651 LOC103362051 coding upstream 182354 7783608 ~ 7819242 (+)
AMCG00008649 LOC106565510,LOC106583272,LOC108424584 coding upstream 276412 7722241 ~ 7725184 (+)
AMCG00008648 NA coding upstream 332252 7622630 ~ 7669344 (+)
AMCG00008644 NA coding upstream 448814 7543720 ~ 7552782 (+)
AMCG00008643 gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665 coding upstream 505591 7487170 ~ 7496005 (+)
AMCG00008653 NA coding downstream 4924 8021668 ~ 8036234 (+)
AMCG00008657 NA coding downstream 83851 8100595 ~ 8101654 (+)
AMCG00008656 NA coding downstream 109255 8125999 ~ 8138061 (+)
AMCG00008663 LOC107714908 coding downstream 227297 8244041 ~ 8273718 (+)
AMCG00008665 LOC103367933,LOC106456382,LOC108433351,LOC107714908 coding downstream 260027 8276771 ~ 8293517 (+)
G50617 NA non-coding upstream 5535 7995755 ~ 7996061 (+)
G50616 NA non-coding upstream 10879 7990425 ~ 7990717 (+)
G50579 NA non-coding upstream 101405 7896853 ~ 7900191 (+)
G50561 NA non-coding upstream 172694 7692936 ~ 7828902 (+)
G50571 NA non-coding upstream 175056 7824883 ~ 7826540 (+)
G50627 NA non-coding downstream 52016 8068760 ~ 8075004 (+)
G50668 NA non-coding downstream 173081 8189825 ~ 8190785 (+)
G50692 NA non-coding downstream 229833 8246577 ~ 8246832 (+)
G50698 NA non-coding downstream 252263 8269007 ~ 8269326 (+)
G50757 NA non-coding downstream 555985 8572729 ~ 8589128 (+)
G50583 NA other upstream 61825 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 685746 7296886 ~ 7315850 (+)
G50448 NA other upstream 983471 6957611 ~ 7018125 (+)
G50243 NA other upstream 2258846 5738541 ~ 5742750 (+)
G50215 NA other upstream 2404797 5596023 ~ 5596799 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 262109 8278853 ~ 8324778 (+)
G50747 NA other downstream 433422 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1065083 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 1099931 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 1293342 9310086 ~ 9316151 (+)

Expression


Co-expression Network