AMCG00008656


Basic Information

Item Value
gene id AMCG00008656
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8125999 ~ 8138061 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008656
TTTTGTTCCAGTGCCCGTGGACAGCACCGCGTCTGTCTGCACGGCTGCCGGCGATGCGGCCCCTGAGCCCGGCCGCGCTGCTGTGTGCGCTCGCTGCGTGTGCGCTGTGCTCCGTGCTGGAGCGCCGGGAGGCCCACACTGAAGCCACGgcCTATCTGAAGAAGTACGGGTACCTCCACACCCCCCTGGACCTGGAGTCTCAGGGTTACGATCCCGAAGAGGTTAAGGAGGCTCTCAAGACCTTTCAGAGGGTGACCGAGCTGCCTGTCACAGGAAAAATAGACAAATCCACTCTGTCAAAGATGAGACAGCCGCGCTGCGGGATCGAGGACCCCTTTAACCAAAAGACCTTCAAATACCTCCGGCTGGGGCAGTGGGCCAAGAAGGACCTGACCTATCGCATCTACAACTACACCCCCGACATGGGATTAGCCAAGACCCGCAGTGCTATCCAGTCGGCTTTCAAGTACTGGAGCGATGTGGCGCCGCTCAGCTTTCGGGAGGTGCAAGCGGGAAGGGCCGATATCAAGATCTCATTCCACAAGAGGGGCCACACCTGTGCTGTGGCCTTCGACGGGCCTGGGCGGGTGCTTGCTCACGCTGACATCCCAGAGTCAGGGATTGTCCACTTTGATGAAGACGAGTGGTGGACGGAGGGCACAAGCCGTGGAGTCAACCTGCGCATCATTGCAGCCCACGAGATCGGCCATGCACTGGGGCTGGGCCACTCGCAGTATTCCCGGGCCCTCATGGGCCCCGTCTACACTGGCTATAGAAATCCCTTCACGCTGCACGCTGACGATGTTCGCGGCATCCAGGCTCTGTACGGTAAGGGCCCCAAAGCCTGCATCGGCATCACTGTGTCCGATTCTGCTAgcaaacgtGGGGACAAGCCCGACCCCTGCACTGCCAACCTAGATGCCATCATGCTAGGCCCCTTCAGGAAGACCTTTGCGTTCAGTGGAAAGTACGTGTGGACGATTTCTGACATGGGACACAACCAACTCATCAAGATCAACCTCCTGTGGAAGGAACTCCCAGGGAACATCAACACAGCTGTTCACTCGCAGAAAACCAACAAGACCTATTTCCTGAAagGTAACAAGGTGTGGAGGTACACCGGTTTCAAACTGGATTATGGCTACCCCAAACCACTCACCCGCATCCCGCCGAACATCGACGCTGCCCTGTACCTAGAGAAGAACCAGAAGATTATCTTCTTCAAGgggGACGGTTACTGGCAGTGGGATGAGCTGGTGTACAATGACCTTAGCATCTACCCTAAGCCCATCTCTCACCTCTTCACCGGGATACCCCCCAACCCAGATGCCGCCTTCACATGGACCAATGGCAAGATTTACTTCTTCAAAGGTGACCAGTACTGGCGTGTCAACAGCCAATTCACTGCTGACAAAGGCTACCCACAGAGCAAGAGGGAGCGCTGGATGCAGTGCCATAAGTAGACAGCAAGGGGGCATTGGGGAGCAGGGCTGGGAATGTGGGGGCAAGGAAGGGGTGGATCAGTCTGGCCAGATAAACCACTTGGACCAAGAATACAAAGCTAAGCCTAAGGCCAAGTCTATTCCAGGACAAGGTGATTTTAAGCAAAGGTTTGAGAAAAGCCAACCTTTTTTTGACTACTTTCTTTAAGCACATAGTTATGTTTGTTcagctttttaatttcagtaaacAGGCAGAATGTTTATGAGGAAGTAGTATTGAAAATGGTCCAAGGGCAATCAAAGGTTAGTCCCCTGTGATCTAAAATAGCATCTTATACTTTCAATTTcagtatataattaaaaaaaccaATCCATTCCAGAGTGTAGAGAAACAGGACCACAGTTTATCCCTTCATTGCCAGAGATTTTCCTCTTCCACAGTAGCCAGTGTGTTACCATTGCTAGGGCTTTTGCTATGATTATATGgtccagacagagagaggaagggagagagacaccAACTGCTCCAGATCTTCTTCCCTCAAACATCTAACTTCCAACTGTGCCATTTCACTGCAAACTTTTCTGATGTTATTCTGAAATGCTCTGGCCAAAAAAGTGCTTTACCCCCAGCCCCAAGCCTCTGTCTCAAAACAAATGGTGACCCAAACAAATCCAGTTAGCCCAGccccacattttatttgtgaaaactATAATGTTATGTAAACTATGAATTACTCTCTCTGGACCTGACTGTCCATTTAAGGTCAATCAAACTGTGCAAacaatgcaacaacaacaataacaatgcaGCCTCCCCCCCACTCTTGAGAAATAGAATGCATACATAGATATTGTTAATGCAAACTGACTGAGAGCCAAACCAAAGCCTTTACATGTGAGTGAATAAATAGCCCACATTTTACTAACTATATCACTAATGAGAACAGAATAACGCAGTTTCCCACATCGATTTAAACAAGTTAACAATCAAGGTATTCATTCCTAAGCCAATCAAATTCTGAAACGTCAACATACTGCCACACAGTGGTACAATGAGGTATCGTTGGGAACTTTTTgaacattaacatatttaccAGGGATGGGTATTTTGTAGCATTTTATCATTTGGCGAGTGTAAACAACGTACTCGAGCACTGGGACCTAATATGCATTATCCTGCATACGCTTCACAAACATTAGCAGCACAAGTCGTATTGTTAAATTCCAGTGCATGTCCCTGGCTTGATTCTGCTGCGTTACGAGTacaagtttgtttatttttatttgctagCAGATTGCTCTCTACAAACTAACCGTCAACTAAACCTAGGCctatcaataaattaatacattttaaaataatttatcttGACGTTTTCTATATTTCAGTGTTTATCTTTTACAAAATGATAGTTTCAGAGTTAGAAAAGCAAAGCACATGATCTGAACTATTTTGCATACCAGCCTACCCAGCGTTAATCATTTACAAGgaattattattgaaaaatcATGTACCTCACATTGAAcaagatgtattatttatgttatttttgaaattgaatgCACAAGTAATTCCAGTTTTAAGTTTGGGAACCCTAGTatttacacacaatacaaacttGGAAATAACATTGTATGTGGATTGCGGTTTGTTACATTTCGAGCTCTGCTCAGAAGAGGATGAGGTATTTATAGCTAGATACTGCCCATACTTTAAACATGTCTGTTGTATACCAGCACTACTATTGTGTAACCACTGACTAGAGTAACATTGTGACTCACCTCCTTCATAAGGACTTTGCCAGTATTTTCTATTGCTCCGGTTTAAACTAAGGGTATACGcttcttgtggttttgaaaCGTTTGCTACCATCAGCTGATGTTTTAAAGCTTTAGTAGTCAGACGTTTGTGCTAGGATTCACCGTTCTGTTCTGAggatatttttcattaaataaattaaggttATTAGGTCCTTAACTAaagcatgtttttgtattttgtgttattcttATAAAAGGCCATCTGGTATGGAGTCTTCCACATATTCAGGGTCATCAACTgtagtttatttgtgtgtgcgtttgtttttcaaatcaaatgtaaatttcTCAACTCATGACTTGCCTGGAAGTggacttaaaatgtaaatgaacacaAATCTATAGGTGATGTCCTTGCAAACGATTTATGTCACTAGCGAAGGGCGATGACTATCGCTCGCACTGCCGCAGTTACTGGATAACTGCTTTATCATTATAAAATGATTAGTATCAGAGTTGTACgtttttcataaaataacaataaataataccaa

Function

GO: NA

KEGG:

id description
K07998 MMP19, MMP18; matrix metalloproteinase-19 (RASI)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008656 True 3760 mRNA 0.45 9 8125999 8138061

Neighbor

gene id symbol gene type direction distance location
AMCG00008657 NA coding upstream 24345 8100595 ~ 8101654 (+)
AMCG00008653 NA coding upstream 89765 8021668 ~ 8036234 (+)
AMCG00008652 NA coding upstream 109255 8001596 ~ 8016744 (+)
AMCG00008651 LOC103362051 coding upstream 306757 7783608 ~ 7819242 (+)
AMCG00008649 LOC106565510,LOC106583272,LOC108424584 coding upstream 400815 7722241 ~ 7725184 (+)
AMCG00008663 LOC107714908 coding downstream 105980 8244041 ~ 8273718 (+)
AMCG00008665 LOC103367933,LOC106456382,LOC108433351,LOC107714908 coding downstream 138710 8276771 ~ 8293517 (+)
AMCG00008671 cdk2,LOC107570445,LOC107683630 coding downstream 219367 8357428 ~ 8364543 (+)
AMCG00008670 rab5b,rab5c,LOC108245972,LOC103393176,LOC107381932 coding downstream 231646 8369707 ~ 8383963 (+)
AMCG00008678 NA coding downstream 530540 8668601 ~ 8669729 (+)
G50627 NA non-coding upstream 50995 8068760 ~ 8075004 (+)
G50617 NA non-coding upstream 129938 7995755 ~ 7996061 (+)
G50616 NA non-coding upstream 135282 7990425 ~ 7990717 (+)
G50579 NA non-coding upstream 225808 7896853 ~ 7900191 (+)
G50571 NA non-coding upstream 299459 7824883 ~ 7826540 (+)
G50668 NA non-coding downstream 51764 8189825 ~ 8190785 (+)
G50692 NA non-coding downstream 108516 8246577 ~ 8246832 (+)
G50698 NA non-coding downstream 130946 8269007 ~ 8269326 (+)
G50757 NA non-coding downstream 434668 8572729 ~ 8589128 (+)
G50823 NA non-coding downstream 665145 8803206 ~ 8809391 (+)
G50583 NA other upstream 186228 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 810149 7296886 ~ 7315850 (+)
G50448 NA other upstream 1107874 6957611 ~ 7018125 (+)
G50243 NA other upstream 2383249 5738541 ~ 5742750 (+)
G50215 NA other upstream 2529200 5596023 ~ 5596799 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 140792 8278853 ~ 8324778 (+)
G50747 NA other downstream 312105 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 943766 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 978614 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 1172025 9310086 ~ 9316151 (+)

Expression


Co-expression Network