AMCG00008657


Basic Information

Item Value
gene id AMCG00008657
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8100595 ~ 8101654 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008657
TCAGGGAAGTACATTGCAGCCACACAGCGTCCAGATGGCACCTGGAGGAAACCGCGGAGGGTGAAGGATGGCTATGTGCCTCAGGAGGAAGTGCCAGTCAAGCCTGACCTGCCCCCGGGGATGAACCCTGAAGATGCAGCCCAAACTAAGCAGCAGCAGGGGGGGGCAACGGTGACAGCAGTGAGgtcggagagagagagcgaggcgTTGTCGGGGCTCTCCAAGACCGCCAAGCGCAACTTGAAACGCAAGGAGAAGCGCAAACAGCAGCAGGATGGCCGGGGCAGCGCGGATGAGGGGGCGCCTGCAGTGGAGGCTCTGAGCTCCAGGGTGGAGAAAGTAGAGATCGGTGGCAGTGGAGGGGAGGAGGGCAGGGATGGCAACGGCAGGCCACAGCAGAACAGCGGACAGGGCCAGACAGCGATGGAGGCAGGGGTGGTGGGATCTGGGGGCGAGAAGGCGAAGAAGATCAAAAACCTCAGGAAGAAGCTGAGGCAGgtggaggagctgcagcagaAATTGGACTCAGGCGAGATCAAGCAGGCGACCAAGGAGCAGCTGGAGAAGCTGGGCCGGGCCAAAGCCTTGGAGGAGGAGCTTCGAGAGCTGGAGCAGGATTCGTAG

Function

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component

KEGG:

id description
K14294 WIBG, PYM; partner of Y14 and mago

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008657 True 624 mRNA 0.62 2 8100595 8101654

Neighbor

gene id symbol gene type direction distance location
AMCG00008653 NA coding upstream 64361 8021668 ~ 8036234 (+)
AMCG00008652 NA coding upstream 83851 8001596 ~ 8016744 (+)
AMCG00008651 LOC103362051 coding upstream 281353 7783608 ~ 7819242 (+)
AMCG00008649 LOC106565510,LOC106583272,LOC108424584 coding upstream 375411 7722241 ~ 7725184 (+)
AMCG00008648 NA coding upstream 431251 7622630 ~ 7669344 (+)
AMCG00008656 NA coding downstream 24345 8125999 ~ 8138061 (+)
AMCG00008663 LOC107714908 coding downstream 142387 8244041 ~ 8273718 (+)
AMCG00008665 LOC103367933,LOC106456382,LOC108433351,LOC107714908 coding downstream 175117 8276771 ~ 8293517 (+)
AMCG00008671 cdk2,LOC107570445,LOC107683630 coding downstream 255774 8357428 ~ 8364543 (+)
AMCG00008670 rab5b,rab5c,LOC108245972,LOC103393176,LOC107381932 coding downstream 268053 8369707 ~ 8383963 (+)
G50627 NA non-coding upstream 25591 8068760 ~ 8075004 (+)
G50617 NA non-coding upstream 104534 7995755 ~ 7996061 (+)
G50616 NA non-coding upstream 109878 7990425 ~ 7990717 (+)
G50579 NA non-coding upstream 200404 7896853 ~ 7900191 (+)
G50571 NA non-coding upstream 274055 7824883 ~ 7826540 (+)
G50668 NA non-coding downstream 88171 8189825 ~ 8190785 (+)
G50692 NA non-coding downstream 144923 8246577 ~ 8246832 (+)
G50698 NA non-coding downstream 167353 8269007 ~ 8269326 (+)
G50757 NA non-coding downstream 471075 8572729 ~ 8589128 (+)
G50823 NA non-coding downstream 701552 8803206 ~ 8809391 (+)
G50583 NA other upstream 160824 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 784745 7296886 ~ 7315850 (+)
G50448 NA other upstream 1082470 6957611 ~ 7018125 (+)
G50243 NA other upstream 2357845 5738541 ~ 5742750 (+)
G50215 NA other upstream 2503796 5596023 ~ 5596799 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 177199 8278853 ~ 8324778 (+)
G50747 NA other downstream 348512 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 980173 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 1015021 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 1208432 9310086 ~ 9316151 (+)

Expression


Co-expression Network