AMCG00008658 (LOC103376555,LOC104932002)


Basic Information

Item Value
gene id AMCG00008658
gene name LOC103376555,LOC104932002
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8140051 ~ 8146234 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008658
atgacctctgaccccacTTACCTGGGCCCAGACGGGGCTGGGGCAGGCTTGGTGGAAGTGGACACCTGCAACCTGGAATTAGAACGCAAATATGAGGTCATCCCTGCTGTCATCTGCGCCATGTGCTGCCTTTTCGGCATCATCTACTGCTTCTTTGGGTATCGCTGTTTCAAGGCGGTTATGTTCCTATCAGGGCTGATGTTTGGCTCCGTTATCATCTTCCTGCTGTGCCACAAGGAGCGGGTGCTGGACACCCAGCTAAGCGTGGAGGCCAGCGCAGGCATCGGCCTGGGCATCGGACTGCTATGCGGCCTGGTCACCATGCTGGTGCGCAGCGTTGGGCTCTTCATGACCGGCCTGCTGTTGGGCCTGCTGCTCGCCCTCGCCGCCCTTGTGGCCATGAACCAGTTCTACAGCCCGGGCACAGTCTGGGTGCCCCTGGGAGCCATGCTGGGCAGCGGGATGCTGTGTGCCGTCATCACCCTACAGTGGCAGAAGCTGTTCACTGTCCTCTCCACGGCAGTGTTCGGGGGCGCCATCATGACCGTGTGTGTGGACTACTTCATCGAGAATCTGAATCTGGTGGTCTATGTGTACAACCACATCCGCCTGATGGCTGCCCCGCCCCTCTGCTGGTACAGCTGGGTCATCATGGGCGTCTGGCCCGCGCTGAGCATGCTGGGAGTGGTGGTGCAGTGGAAACTGACGGCTGAGGGCTTCTCACACACTGAAGTCATCATCAGCCGGCGACAGAAGCGGGTGCAGCTGATGAGGATCCGGCAGAAAGATGCCAAGAAGCGTCAGCAGAGCGGAGCCCAGGAGGGCACCTACCGCCGCAAACCCACCCCCGTCAAGCGATACGCTGGAGACGTGCTGGCACCGAGCTACCTGCAGAGCCTCCGGGACCGCCAGATGGGCACGGGCACCTCCCTCAGCAGCCTGGGCACCGCCAACCACACCATGGTGGACTTTGACTACGACACGGGCTCCACAGTGCCCCTCACCGCCACCACCCCCGTCGTGCAAGTGTGA

Function

NR:

description
PREDICTED: transmembrane protein 198-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008658 True 1032 mRNA 0.62 4 8140051 8146234

Neighbor

gene id symbol gene type direction distance location
AMCG00008654 NA coding downstream 65027 8037032 ~ 8075024 (-)
AMCG00008655 NA coding downstream 278515 7819151 ~ 7861536 (-)
AMCG00008650 tmbim6 coding downstream 393747 7728099 ~ 7746304 (-)
AMCG00008646 NA coding downstream 597164 7527549 ~ 7542887 (-)
AMCG00008647 gdf11 coding downstream 622209 7434320 ~ 7517842 (-)
AMCG00008660 timeless coding upstream 46018 8192252 ~ 8207177 (-)
AMCG00008659 NA coding upstream 85445 8231679 ~ 8244280 (-)
AMCG00008661 si:ch211-114n24.6,LOC108275942,LOC107659949,LOC106456382,LOC108433351,LOC103467923 coding upstream 105620 8251854 ~ 8273688 (-)
AMCG00008669 LOC106456382,LOC108433351,LOC103385219,LOC103467923,LOC101079871 coding upstream 170393 8316627 ~ 8320297 (-)
AMCG00008667 NA coding upstream 183665 8329899 ~ 8332822 (-)
G50657 NA non-coding downstream 1990 8137475 ~ 8138061 (-)
G50647 NA non-coding downstream 34449 8105372 ~ 8105602 (-)
G50632 NA non-coding downstream 35248 8005638 ~ 8104803 (-)
G50646 NA non-coding downstream 40606 8098772 ~ 8099445 (-)
G50615 NA non-coding downstream 155100 7984740 ~ 7984951 (-)
G50711 NA non-coding upstream 132518 8278752 ~ 8324775 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding upstream 211216 8357450 ~ 8360962 (-)
G50740 NA non-coding upstream 226272 8372506 ~ 8384007 (-)
G50784 NA non-coding upstream 427780 8574014 ~ 8574338 (-)
G50836 NA non-coding upstream 691125 8837359 ~ 8840655 (-)
G50656 NA other downstream 4637 8134581 ~ 8135414 (-)
G50602 NA other downstream 237445 7901335 ~ 7902606 (-)
G50476 NA other downstream 988579 6947889 ~ 7151472 (-)
AMCG00008634 NA other downstream 1206962 6920707 ~ 6933089 (-)
AMCG00008633 prkaca,LOC108429687 other downstream 1254364 6839077 ~ 6885687 (-)
AMCG00008662 NA other upstream 36695 8182929 ~ 8190177 (-)
G50710 NA other upstream 122789 8269023 ~ 8269326 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other upstream 124090 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other upstream 134981 8281215 ~ 8293486 (-)
G50739 NA other upstream 221682 8367916 ~ 8371330 (-)

Expression


Co-expression Network