XLOC_006027


Basic Information

Item Value
gene id XLOC_006027
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28475601 ~ 28483406 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013403
ctcAGTTGTCGAGTTGAATCGCTCGGTCGATGGATACGTCAACAAGCGATGAGCTACGGCGATGTCCGTTTGTCATTTGTGAACGCATCCCGGTGGTATTTATGTGGTTTGTACGCATCCCTTGGGCTACATCACTTCCCAAGAGTGTATCGTTCGGAATTCGCGCCGTTTTTACCACAGcATTCTTTGACACTGTTTTAATGGACAGATTTCACCAGGAATGCTGTTCATTGTCTATGGGCTGAATCCTGATCCAAAAACACTGCAGTTCTGCTGGAGTCAAGTCCCGGAAATGCTACGGAACTGAAATCCCAAACATCATGACCACGTTTCCTTCCGGATGTCCATGAGCACAGTTGTCAGCCCCATCACAGGATCTTACGGACAAACTCGGCAAACCACACAGGCAGGCCACACGgtcattttgcatttaaaacttACACAGTTCCTCTGTTTTATTGTGCTGAACTTTATTCTGTGGTAGGTGGTGGCAGCTTTAACAATACAGCAACAAAAACACAGATTGAGCATGCTAAAATGTATGCTCCAAAACTCTCCTGCTCTACACTTTAATTTTAGAGTCCAAACATATTTTCAAGCAGGTTTCTAACCAGACAAGTGAAAAAGCAACAGGGTAAGAAAATCTTCAGACACATTTGTGCTTTTAATCAATGAAATACCTCCAGCACTACCTCATATTGGAGGCCTGCACTGGCCTAAAATACATTTGGAAAAGTAAAAAACTTCCTTTAAACCCACGCAAGGCTCTGCAATGACATTTGCCAGCCAGCCAGGAACAATTTCCCACGCTTTTACTCCTTTTCGCGACAGAAAGAGTGGCCGTCGGCTTCGCCTGAACAGCCTTCCTGAATCCAGTGTGTGGCGTTTTATGTCTAGCTTAAGCCTGGGCAGTTATGCCGCCGTAAATTTAGCCGTTTCAGACATTCAGTCACTTCTCTCAGCTAATATCAAGCAGAAGTGACCCGCCAGTGCTTTTACAGCCTCtatgccatgtgtgtgtgtgcagatcatGTATTGTAATAGCAGAAGAAAGATGTAAAAAGCAGTCTGTGAGGAGGGCAGAAGGAATGGATGGTGGAGGGAGAACATGAATGTGCTGGGAGCAGGGCAATGCTTGGAATGAGTCCAGCTTATAACTTTTCTGTAACAAATGGAGGCCAGACACCAGCACAAGGCGTgtgaaaaataatgaaatggtGACATGGGAAGCACAGCTTTTCTTGCACGGGTGCGATCAAAGCTACAGAATCATGCAGTGCATTTATTAAAACAGTGGAAAGCTTGTTTAATGACTAAAGTGACTTACTTAACCcgttaaaaagtgttttataaacAGAACTGCAGTTGTTAACTGTTTCCATTTAAGCTGAAAATGACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013403 True 1399 lncRNA 0.44 2 28475601 28483406

Neighbor

gene id symbol gene type direction distance location
XLOC_006026 slc2a15a coding upstream 33515 28417297 ~ 28442086 (+)
XLOC_006025 CR762431.1 coding upstream 61042 28406913 ~ 28414559 (+)
XLOC_006024 NA coding upstream 193278 28264236 ~ 28282323 (+)
XLOC_006023 b3gat2 coding upstream 466027 27951688 ~ 28009574 (+)
XLOC_006021 NA coding upstream 669721 27785094 ~ 27805880 (+)
XLOC_006028 fgf8a coding downstream 12013 28495419 ~ 28501985 (+)
XLOC_006029 fbxw4 coding downstream 29124 28512530 ~ 28575459 (+)
XLOC_006030 NA coding downstream 81773 28565179 ~ 28567486 (+)
XLOC_006031 wbp1la coding downstream 96951 28580357 ~ 28596765 (+)
XLOC_006032 borcs7 coding downstream 128907 28612313 ~ 28615893 (+)
XLOC_006022 dre-mir-30e-2 non-coding upstream 680392 27795130 ~ 27795209 (+)
XLOC_006019 CR354610.2 non-coding upstream 1083664 27363949 ~ 27391937 (+)
XLOC_006037 CU640488.1 non-coding downstream 256829 28740235 ~ 28740369 (+)
XLOC_006039 NA non-coding downstream 324686 28808092 ~ 28817882 (+)
XLOC_006042 NA non-coding downstream 432132 28915538 ~ 29097526 (+)
XLOC_006043 CU639469.2 non-coding downstream 441440 28924846 ~ 28924965 (+)

Expression


Co-expression Network