AMCG00008663 (LOC107714908)


Basic Information

Item Value
gene id AMCG00008663
gene name LOC107714908
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8244041 ~ 8273718 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008663
ATGGAGAGCCCAGGTAGCGGCCGCTGGACATGGACAGGCGGGAAGGGAGAGGAGAGTAGTTACTGGCTTGGCATTGGCACTGCAAAACTCCATCCTCATCTGACAGGATTCAATGGAAAGCACTCAAGCACTTTTCTCATCGGTTTTGAGCAGTTATGTAAATTCTGTCTGGTCACATTGTACCAGCTGAAGGAGGGACAGCTATCACCAGCACTGCAGTATCGGTCCCAGCCTCTGCAGAACATCAGACTACAATCACCTCTTTTCCTGTCCTATTTCTCCTGCATAATGCTGGCTGTTAACGTGTACTATGGGCAGAATGAACTTACCAATGACTGTGGGCTCCAGATCTACAAAGACAGCTCTGGGCACGTGCTTGCCCGCTCCAGTCTCACTGAAGAAGGTGTTGAAGGAGTCATCCCCTCCTCCAATGGTCTTGTCGCTGGGCATCTGGCCATCAGGCTGGATCCCGTGCTCCAGGCAATAGAGCTCCCAGCAGGCATTGCCAATCTGGACACCAGCCTGGCCAACGTGGATGGAGATGCACTCAcgctgaggagagagaggaAATTTACATACCCGCAGGAATGGGTGACATCAACACTTTTTGGGAAGCCCTCcccacagcccccaccccccttctctcctctccgcCCCATCCTCTGCGTGACCTGCTCTTTTAACTGCCTCACTGCCACAGCATCCCAGCTGCCAACCAGTACCAAAGAACAAAGGCCAATCAATAGCACAGCGCATGCGCGGGTGATCCACGAATGGACGGAGACGCGCCCGCCCGCCCCGCAGCACGACGCCCGCAGCCGCAGCCGCAGCCGCAGCCGCATCAATAATGCACCGGGACCGGGGGCTCGAGTAACGGTTCATCACGACGCGACACTTACATTAGGGAATTGA

Function

NR:

description
PREDICTED: tubulin alpha-1A chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008663 True 912 mRNA 0.56 6 8244041 8273718

Neighbor

gene id symbol gene type direction distance location
AMCG00008656 NA coding upstream 105980 8125999 ~ 8138061 (+)
AMCG00008657 NA coding upstream 142387 8100595 ~ 8101654 (+)
AMCG00008653 NA coding upstream 207807 8021668 ~ 8036234 (+)
AMCG00008652 NA coding upstream 227297 8001596 ~ 8016744 (+)
AMCG00008651 LOC103362051 coding upstream 424799 7783608 ~ 7819242 (+)
AMCG00008665 LOC103367933,LOC106456382,LOC108433351,LOC107714908 coding downstream 3053 8276771 ~ 8293517 (+)
AMCG00008671 cdk2,LOC107570445,LOC107683630 coding downstream 83710 8357428 ~ 8364543 (+)
AMCG00008670 rab5b,rab5c,LOC108245972,LOC103393176,LOC107381932 coding downstream 95989 8369707 ~ 8383963 (+)
AMCG00008678 NA coding downstream 394883 8668601 ~ 8669729 (+)
AMCG00008675 NA coding downstream 406615 8680333 ~ 8693830 (+)
G50668 NA non-coding upstream 53256 8189825 ~ 8190785 (+)
G50627 NA non-coding upstream 169037 8068760 ~ 8075004 (+)
G50617 NA non-coding upstream 247980 7995755 ~ 7996061 (+)
G50616 NA non-coding upstream 253324 7990425 ~ 7990717 (+)
G50579 NA non-coding upstream 343850 7896853 ~ 7900191 (+)
G50757 NA non-coding downstream 299011 8572729 ~ 8589128 (+)
G50823 NA non-coding downstream 529488 8803206 ~ 8809391 (+)
G50878 LOC100846954 non-coding downstream 720818 8994536 ~ 8994903 (+)
G50929 NA non-coding downstream 918059 9191777 ~ 9192377 (+)
G50930 NA non-coding downstream 918812 9192530 ~ 9192919 (+)
G50583 NA other upstream 304270 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 928191 7296886 ~ 7315850 (+)
G50448 NA other upstream 1225916 6957611 ~ 7018125 (+)
G50243 NA other upstream 2501291 5738541 ~ 5742750 (+)
G50215 NA other upstream 2647242 5596023 ~ 5596799 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other downstream 5135 8278853 ~ 8324778 (+)
G50747 NA other downstream 176448 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 808109 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 842957 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 1036368 9310086 ~ 9316151 (+)

Expression


Co-expression Network