AMCG00008670 (rab5b,rab5c,LOC108245972,LOC103393176,LOC107381932)


Basic Information

Item Value
gene id AMCG00008670
gene name rab5b,rab5c,LOC108245972,LOC103393176,LOC107381932
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8369707 ~ 8383963 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008670
CAGAAAATGCGTAACTTAATTTTGTCACTGACGACCCTCCATACTCTTGTGTTTTGAAGTTAAGGAGAGCAGTTGGGGACCAGTGTTTCATCTTGTAGCTTTTCTTTCTGAAGTAGTTTGTTCTCAtcagGTTTTTTCCGGCAACAAGATCCGGCCAGCTTCTCAGTTGGAGGAGCCCCTTTCGCCCCCAACCCGTGGTCATTGTCCCtcccatcccccccaccccccctcccctgtcATCTCCACACCACCCGCTCCCCTCCTCCACACCACCGTCCCTGAACATTGGCTATGGCAGGGCGCCCGTCGCGGCCCAATGGCCAGCCCCAGCCCGGTAAGGTGTGCCAGTTCAAGTTGGTGCTGCTCGGCGAGTCGGCGGTGGGCAAGTCCAGCCTAGTGCTGCGATTCGTCAAGGGCCAATTCCAGGAATACCAGGAGAGCACCATTGGAGctGCGTTCCTGACTCAGTCTGTGTGTTTGGATGACACCACGGTGAAGTTTGAGATCTGGGACACAGCAGGCCAGGAGCGCTATCACAGCCTGGCCCCCATGTACTACAGAGGAGCCCAGGCAGCCATCGTGGTCTATGACATTACCAACACGGAGACATTTGGACGGGCTAAGACCTGGGTGAAGGAGCTGCAGAGACAGGCCAGTCCCAACATTGTCATCGCACTGGCCGGCAACAAGGCGGACCTGTCTGCAAAACGGGCTGTGGAGTATGAAgAAGCCCAGGCCTATGCAGATGACAACAGCCTTTTATTTATGGAAACTTCCGCCAAGTCTGCCATGAACGTAAACGATCTCTTCCTGGCAATAGCCAAGAAGCTGCCAAAGAGTGATCCCCAGGGTGGCACTGGTGGGGCACCGGGCCGTGGGGGGCGCACCGGAGTGGATCTGAGCCAGCCCAGCCAGCCAAGCAAGAGCCAGTGCTGTGGGAattgaggagagagagagtgatggggTGGGGAATGCATGGAGAGAGGGAGTTGGGATTTGGGGGTTGGGGAAGGGGAATTGTGGATAGTGCATTACTGGAACCAATTCTAGGGGGTGTCAGAGCCCTGTGTCTCAAATTGAGCCTCATATCTTAAATCCCACAGTCTAATCCCACCCACTGACCCTTCCCAGAGAGAAGCCCACTAACCTGGGCTCACTTTGAGACTCTTCTGCACTGACACACCCAGCTACTACGCTGATCCCACGAGACAGCCGCACACTTCAAATCATTTCCCTCGACAAAGTGTACAACCATAACAGCACTGCCCATTTTCAATAACGGACATTGCAGAGTGTTACAACAGACGTGTGCTCTCTAAGGACTGGCATGAACTGCTTGACAAGTGCTTCCCTGGAGCAGGGCAACTGTTTGAAGGGTAGTAAGTGATTTGAAGCAGCACTACTACAGATGTCTGAATCTCGAGATCTGCTTTGGTTTTGGTGAAAGGCACCGGGCCAAGTCCTCACCCGGAGAATGTTGAAGGTGTGCAGTACAGAATCGCAAATCAGATCTGCCCCCAATATTTCCATTACATTTACCAATTCTGCAGTTCTGATACAAGGAAATGGGGATCTGCTATAGACGCACCATTATTCAGTCAGTCATCATTTGCCACATTCCAGCTAAAAGATGGAATTTGAGCACAGTGAATGCAGTGGCGAAACCTGACTTCAATACCTTCTCTACACCATCTCCAAGGGCACAATTCATAACAAAACTCCACAGCACACAAATGCAGAAACCTACACTGATGTTTCagttaagaaatgtataaacgACTTGTTGGTTTTCATTATTCACTGATGTGCATCTGACAATTAGGGTTGCCACAGATTTCAAGTATCCACGTCCAGCATGTCAGAGAGTGAAAAGTACTTTTTTGATATGGTGATTTTACTttcatgtctgtgtttttcccAAGATTAAGAAGCATTACCTCTGGTTTACAGCAAAGGTTGGTAGCAAAAAGTTGATGCATATTTAACTACTCATTTGGTAGTAAAGAGGTTGGTCATTGTGGTAAATCGGTCTCCATATTTCTCTAAATGTACTACCCAGCTGTGATCTGTGATGGGTCCACAATTTGccgtacattttatttagtacaCCATTGAGTTTTTGGTCATTGTAATAGTCGTTGGTGAGGAACGTTAAGTACTAGACTGCACTGTTGAGTTTAAGACTTGACCAATTCAGATCTGTTCTAATAAACCCGGACAGGCTAGGCCCATAAGAGAGAGGGATGGCAGTGGGGGCTGGCTTGTGTTCAATGTGAAGCCCTGCATAGTAGAACTGACAAGAGGGTTATTGGTTGGCAGTCTGACTATGAAAATCCCAACTGTATTCCAGCAAGTATGTGGCAGTATGCAGTGTAAAACAATGTGGCCAAGTGGTGAACAGTGATTTCAGAGCCAAGGCCTGTTGATTTTAAGATCCTGTTCTGCACAAGTTTAGGGAAGTTTATATTCCAAGGTATTGTATTGGCTTTGGAAATGGTGgctagaaaatatttttaaatcgtGCTTGAGAGCTTTGATGGAAGGCAGACTGACAGATGTGACAAATGGACCACAACAATAATCCTACAGAAAAAAAGTCTATAAATGGGAAGTGTGGGATTAAAATATTAGGCATTTTATaacgggggggggggtagaCTAGAGTGGATTCAACGAAGGAAGGGGTGCTTTTTATCACGCCACCCCTTCAGTTACCAAATTCCTAATATTTTAGGAAAGAGGAATAGGATTCTGCTGGAGATGGGGTAGACAGTTGATCGAGTGATGGGGTGAGTAGGGCAATGCTTGGAGGGTCTGAAGGGGCCAATGCAGTGACCACAGTGTTGAGAAGCAAGCAAAGGCAGGTCTGGACACAGTCTCCTCATTAGTAACTGAGCACTGGCTTTCTGGTGAAGTGAAGTTTATTGTACAAGTACAACTATAGCATCACAGAGGAAATTCAGTGATTGAGGGTAAGCTGTAAGCCAGCAAAAACACTCACTCGTGAGTAATATGGGGAAATGTTTATTAGTGAGGgttcttaaaatatacagcaAGGGGGGTCCCTGAGATTGTAGGTATGGATAGTTTAACAGATTCACACCAATAGAAGCACCCATCGGGGCAGGCAAATGCATGCTCTGGGGGATAAACACAGTTGCAGACATAGGaggatgttttgtttcataaacacaaaacactccATTCACATACTTTCACCTGgcctccctcccttccccatCGCTTCATTcttttcacttccatttttaTAAACCACATTTAACACTCGGCTTTTATAGACAACAAGTCTGTGTGAATGAAATCAAGTATGtgtacaatttgaaaaaaaaaaaaaaaaagcattttcttttcgATTGTTTTAAATGGATGCAGCATCCCCTTGTGCCGTAATGACTGTTAAATTGTTTCTCGTATCTGACAAGGTTCAAATGTCTTGTTCCCTTTGCtcacaatggaaaaaaacacaattgtggCAACTATTCTGATttgcacaaaacagaaaatagaattaaaaggtaaacattgtgtattcatatttttacatttgactaTCATTATTCCACTGTGTTTCAGATATGGACTAAAGATTTTGCCTCATTATTTGGATTATAAGATGTTAATGTGAAGCTTCTgtatcaaaaatacaaacttgTCTTGTTACAAGTTATTTCTGCATGTGTGGTGATCGAGAGGAACTAATGAAATCTTGACACTTGACACCCCAATCTAGATGGAATACCTTGTCTGAAACATGGGAACAGcttgcatacaaaaaaaaagtagttcGACCAAAAATCAAGGGAACAATCAAAACTCAGACACCCCAATACAGGTTTTAATgtgaacaatatataaaataataaaaaggcatcttttcagtttgaaaagTACAGAAGTTAATGAAGATGGGCTTCATTATGAAACTGGTCCTGATTTGAAGTTAAAAGgttttaagaaagaaaacaaaatggagaatAATCAGTAATAAATGGAGCCTATCTGTATACAACACCATGTGACTTATCCTTTATAGAAAGATGTATGAAGATTAAATTGACTTATTTGCTAGGGTGAAATATGCATTCCTGTCAACTGGTTTGTTCAGCAGTACATTCCTTGGGAGTGCGGGAGTCTTTTCAAATTAAGCACAAGCTGCTAAACAAGGGCTTTGGCTTTTAGTACATGCCCTAGTCCCCAGCTACAGTCTATGCAGGATCAATTTAAATCTGGAGTTTTATTATCCATTCTGGGCTATTGCCAGTCATATGGTGCGATCTGCCGACTTTCTCTGTTGCTTTTACTGAGATTAGATTTTGAATGACATGATAGTTCAGCCTTGGGCTTCCCAACCTCGAGTTTGCTTCCTCTGCATGACTCCTGGCAAGCAAGTGGGGTCTTTGACCTGTGTGTTTCTTGGAGAAGTCACTCAGTATTGCAAATAACAAACATGAGGAGCAGCAACAGAGGTAGACAGAATGTGTTTGTGCAGCTAAAATGCAATTAGATTGTGAAGATGGAGAAATTAATTTGTAGAAAACTTACTGAACCGTGAAACTTTATGATGTTCCATCAGCTAATGGAGTGATTTAATACACTGGCTTAATGTACCTGTATACACAAACCTATGATTCAACATGAAGGGAACTTGGTTTTGTAgaggaaatgtaatttgttccacaatgagaaaagaaaaacaaaacagtgggGATGCTGCAGTATTTTAACTGTCTCGTACTGCATTATACTTTCTCTTAATCAAGTAtttgctaataaaaaataagtgtctTGGCTGGGAGGTTACAATTAAAGTAAAGGAGCTAGGTGactttcacaatgtatttaatgtatgtaaagaATGACTGCAAACAAATGTACTGTCTACCTGTAtgtattacaataaattaaattgcctTTCTTATTATACA

Function

symbol description
rab5b Predicted to enable GTPase activity. Predicted to be involved in endocytosis; intracellular protein transport; and regulation of endocytosis. Predicted to be active in early endosome; endocytic vesicle; and plasma membrane. Is expressed in pronephric duct; pronephric mesoderm; pronephros; telencephalon; and yolk syncytial layer. Orthologous to human RAB5B (RAB5B, member RAS oncogene family).
rab5c Predicted to enable GTPase activity. Acts upstream of or within several processes, including angiogenesis; gastrulation with mouth forming second; and regulation of endocytosis. Located in early endosome. Is expressed in axial vasculature; blood; and intermediate cell mass of mesoderm. Orthologous to human RAB5C (RAB5C, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-5B

GO: NA

KEGG:

id description
K07888 RAB5B; Ras-related protein Rab-5B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008670 True 4946 mRNA 0.43 6 8369707 8383963

Neighbor

gene id symbol gene type direction distance location
AMCG00008671 cdk2,LOC107570445,LOC107683630 coding upstream 5164 8357428 ~ 8364543 (+)
AMCG00008665 LOC103367933,LOC106456382,LOC108433351,LOC107714908 coding upstream 76190 8276771 ~ 8293517 (+)
AMCG00008663 LOC107714908 coding upstream 95989 8244041 ~ 8273718 (+)
AMCG00008656 NA coding upstream 231646 8125999 ~ 8138061 (+)
AMCG00008657 NA coding upstream 268053 8100595 ~ 8101654 (+)
AMCG00008678 NA coding downstream 284638 8668601 ~ 8669729 (+)
AMCG00008675 NA coding downstream 296370 8680333 ~ 8693830 (+)
AMCG00008677 NA coding downstream 310879 8694842 ~ 8699781 (+)
AMCG00008676 NA coding downstream 340110 8724073 ~ 8727731 (+)
AMCG00008679 NA coding downstream 380368 8764331 ~ 8771848 (+)
G50698 NA non-coding upstream 100381 8269007 ~ 8269326 (+)
G50692 NA non-coding upstream 122875 8246577 ~ 8246832 (+)
G50668 NA non-coding upstream 178922 8189825 ~ 8190785 (+)
G50627 NA non-coding upstream 294703 8068760 ~ 8075004 (+)
G50617 NA non-coding upstream 373646 7995755 ~ 7996061 (+)
G50757 NA non-coding downstream 188766 8572729 ~ 8589128 (+)
G50823 NA non-coding downstream 419243 8803206 ~ 8809391 (+)
G50878 LOC100846954 non-coding downstream 610573 8994536 ~ 8994903 (+)
G50929 NA non-coding downstream 807814 9191777 ~ 9192377 (+)
G50930 NA non-coding downstream 808567 9192530 ~ 9192919 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 44929 8278853 ~ 8324778 (+)
G50583 NA other upstream 429936 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 1053857 7296886 ~ 7315850 (+)
G50448 NA other upstream 1351582 6957611 ~ 7018125 (+)
G50243 NA other upstream 2626957 5738541 ~ 5742750 (+)
G50747 NA other downstream 66203 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 697864 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 732712 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 926123 9310086 ~ 9316151 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 971129 9355092 ~ 9379579 (+)

Expression


Co-expression Network