AMCG00008671 (cdk2,LOC107570445,LOC107683630)


Basic Information

Item Value
gene id AMCG00008671
gene name cdk2,LOC107570445,LOC107683630
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8357428 ~ 8364543 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008671
AGCGGAGGTGTGTTCCGCCGGGCTTGGGGTCGGGGGCGTGGTTTCGTCTACGCGGGAATTGGCGGGTTCAGGCACTTTTTGTCTCGGGAGGGGAGAGAGCGGGTCAATGCGGCGCTGTCTTTCGGGGTTCAGTTTCGTCCCCCCCCTCATGTCCCCCCTTGGTGTCGGGCGGACCACCTCGAGCAGTCACACGCCAAGATCCGTGTATAATCCCGTTAATCGGACAGTTATCGGGCTTTGATCGGGGGCGACCGACGGTGGGACTTTGCCCGAGAGACtggggtggcggggggggggcgCGACATGCAGTCATTTCAGAAAGTTGAGAAGATCGGAGAGGGGACCTACGGGGTGGTGTACAAGGCAAAGAATAAACTGACAGGCGAGACCGTAGCGCTGAAGAAAATCCGACTGGATACGGAGACAGAGGGGGTACCCAGTACTGCTATACGAGAGATTTCCCTTCTGAAGGAGCTCAGCCACCCCAACATTGTCAAGCTACAAGATGTAATCCACACTGAAAACAAGCTCTACCTGGTGTTTGAGTTCCTCCACCAGGATCTGAAGAAGTTCATGGactcctcctccatctctgGCATCGCACTACCTCTGGTCAAGAGCTACCTGTTCCAGCTGCTGCAGGGCCTGGCATTCTGTCACTCGCACCGGGTTCTGCACCGCGACCTCAAACCACAGAACCTGCTCATCAATGCCCAGGGAGAGATCAAGCTGGCTGACTTCGGGCTGGCCCGGGCGTTTGGGGTGCCAGTGGTGACACTATGGTACCGAGCCCCAGAGATCCTTCTGGGTTGTAAATATTACTCCACAGCAGTAGACGTCTGGAGTCTGGGCTGCATCTTCGCTGAGATGATCACCAGACGAGCCTTGTTTCCTGGTGATTCTGAGATCGACCAGCTGTTCCGGATCTTTCGCACCCTGGGTACGCCGGACGAAGCCTCGTGGCCAGGCGTCACCACTATGCCCGACTATAAGCCCTCCTTCCCTAAGTGGCCACGGCAGGAGATGTCCAAGGTGGTCCCCCCATTAGACGAGGATGGCAGAGACCTGCTGGCACAAATGCTGCACTACGACCCCACCAAGAGGATCTCTGCCAAGAATGCGCTGGTGCACCGTTTCTTCAGAGACGTCACGATGCCCGTGCCTCACCTGCGACTCTGAGGAGCCGACGGACAGGCGGCTGGCGAGGGAAGAGCTCCTCCATATGATCCCAAAGGACATTCCAGTGCCTTTCAGAACTGATCTTTTTTTCCTGGCAAGATCCAACTGGcctattgtattatatatattttttgtattttagaaacaaacataCATCTCAATGGCCATAAAACTCTTATTCCAACTGAGTCTACAGCGCATAGCTCCAGGTTTGGAGACCAAAGCTATAGACCTTGACATTTCAATACTGGTTAATCGCAACTTCCTTCCTCAGTTCTTTTAGCCCATTGTAGGGTGGGGGTTTCTGTAGATCGATGTGGGAGTATAGTTATTATAGTCAGTTTTGATTGAGGGGTTGTGTTTTAAGAGTGTTCTGTAATTGGGATCAAACCAAATAAGAAAAAGTTCATGTTTTGATCATAAGCCATGATGCTGGTGCTTGAACCACGAAACAATCTGGACAACAATATTGTAGCCAAGACCAGGTGAATTCTAATGACTTCAAGACTGGGTTTACAGTCGGAAACCTCAACGTCAATCAAGCCTTTGTAATGAAGTGGGTCTTGAGAATAAATCCAGTAATCAATAAACCCAACAATTGGCAGATTATAATGTATCCTCTTATAATTACATTACCATATATccatttgatgtgttttttaaagcttaACCTACAGACTGAAAAAACTTAtcaactatttttgtttttatgttccccctgcactttttatttattgctgtaaTTATGTAggaatcataaataaatacattaaaatgtattttgttcagtAACCTTGATTTGTCCAGTTTATAGAACTTctggaaatatatacattttaaggttttaatttCTGTAGGTAAGCTTTAATTATCAATTGGAAATAATACCTTAATTGTTATTCAGTATTATAGGATATTTGATAAGCCAGTAGTTGAGTTGTATTGATTGCTTCCTGACATTGGAATTTGTTGGATTGATGGCTTGAATAAATCTGATCTTCAGGTTGTTTAAATTAACCTGTGAGTTTTGTAGGGTCTTAATTATAACCATACTGTTGATATTGAAGGAGtggatggatttgtttttgttgtgatcTCAAGATTAGGCCATAATGAAACTTGGCCTTGTTGGGATATTTAATGCCATTTGTAATCTGGTGGCTCTTACTTCAGGGTTGGTTTAATAAAGcatggagggagagaaagaccAGCATAGCAGGTTTAAAGTGTTTAAGTGGTTCCAAAAGCAGAGGTGAACACTGAAATGTTACTTTTGCTGACATACACAGAGTAGTTCCCTGTGTCTTCCCTTGGAGACTTTTTCCCTAATTCAAAGTCAAACttacaataataaaagcttAATTGTCTGCCTGTCCgccatttttcttaaattattagttattgttttttaacctgCCCTCAGAATGAAGGCCGTTATTAGTTAAGCCACTTGGGAGTCCAATATTGCAAATGCTCAGCATAAAGAGAATCTGCAGGTAACTTTTTAAACCCCCCACCATTCTTTGCATGATGGAAGAGGTAGATCTTTGCTTATCTGGGGGCTGCTACAGCTGTGGTGGAGAAGACTGGTACTggtgctggtttttgttccacctcATTGCTTAATAAAATGAACCCTTTATTTGAGAAACTGGACCACTGGCTTAGTCTCCTGTAGGATGTCCACTGTTTTGCTCTTTGTTAATTTCACATTGCTCCCCACCACACCTTGACTGTCCTGTCTCTTCTAAGATTCCCCCAAGTTGTGATTGCCCCAGTTTGAGGTTCAGCAGGTAACTTAGGGCTGAAATAGACCACATTTAGGAGATCTTGTCCTAGGCTTTCCAGGAGAGTGTGACCAGTAAGGGGTGCTTTGACAAAAAAGCAAGCTAAGGGATAGActcagg

Function

symbol description
cdk2 Predicted to enable cyclin binding activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in several processes, including G1/S transition of mitotic cell cycle; protein phosphorylation; and regulation of G2/M transition of mitotic cell cycle. Predicted to act upstream of or within phosphorylation. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in prostate cancer and renal cell carcinoma. Orthologous to human CDK2 (cyclin dependent kinase 2).

NR:

description
PREDICTED: cyclin-dependent kinase 2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02206 CDK2; cyclin-dependent kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008671 True 3086 mRNA 0.46 7 8357428 8364543

Neighbor

gene id symbol gene type direction distance location
AMCG00008665 LOC103367933,LOC106456382,LOC108433351,LOC107714908 coding upstream 63911 8276771 ~ 8293517 (+)
AMCG00008663 LOC107714908 coding upstream 83710 8244041 ~ 8273718 (+)
AMCG00008656 NA coding upstream 219367 8125999 ~ 8138061 (+)
AMCG00008657 NA coding upstream 255774 8100595 ~ 8101654 (+)
AMCG00008653 NA coding upstream 321194 8021668 ~ 8036234 (+)
AMCG00008670 rab5b,rab5c,LOC108245972,LOC103393176,LOC107381932 coding downstream 5164 8369707 ~ 8383963 (+)
AMCG00008678 NA coding downstream 304058 8668601 ~ 8669729 (+)
AMCG00008675 NA coding downstream 315790 8680333 ~ 8693830 (+)
AMCG00008677 NA coding downstream 330299 8694842 ~ 8699781 (+)
AMCG00008676 NA coding downstream 359530 8724073 ~ 8727731 (+)
G50698 NA non-coding upstream 88102 8269007 ~ 8269326 (+)
G50692 NA non-coding upstream 110596 8246577 ~ 8246832 (+)
G50668 NA non-coding upstream 166643 8189825 ~ 8190785 (+)
G50627 NA non-coding upstream 282424 8068760 ~ 8075004 (+)
G50617 NA non-coding upstream 361367 7995755 ~ 7996061 (+)
G50757 NA non-coding downstream 208186 8572729 ~ 8589128 (+)
G50823 NA non-coding downstream 438663 8803206 ~ 8809391 (+)
G50878 LOC100846954 non-coding downstream 629993 8994536 ~ 8994903 (+)
G50929 NA non-coding downstream 827234 9191777 ~ 9192377 (+)
G50930 NA non-coding downstream 827987 9192530 ~ 9192919 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 32650 8278853 ~ 8324778 (+)
G50583 NA other upstream 417657 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 1041578 7296886 ~ 7315850 (+)
G50448 NA other upstream 1339303 6957611 ~ 7018125 (+)
G50243 NA other upstream 2614678 5738541 ~ 5742750 (+)
G50747 NA other downstream 85623 8450166 ~ 8666548 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 717284 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 752132 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 945543 9310086 ~ 9316151 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 990549 9355092 ~ 9379579 (+)

Expression


Co-expression Network