AMCG00008677


Basic Information

Item Value
gene id AMCG00008677
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8694842 ~ 8699781 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008677
ATGCTGATCGGCACCATCGGTAGCATCCAGGCGCAGGTGGTCCAGATTGACAGCCGCTTGAAAGAGAAGCTGGAGCCGGAGATGTATCAGAAACTTTACAGCCTAACTGTGCCTCTTTCTGATCGCATCCACATCGCCAGCAGGGTGCTGAGCGGCGCTTTTGGCATGCTGGGCTCGCGCGCCATGGTTGCCGAGCTCATCCACAAGAGGGCAGTGCTCGGCCGCATCGTGGCAAGCCTAGGCCGGGTTGGCACCTGCGCGGTGGCCACAGTCGCCCTAGGAGTTTTGGGGCTGGGTGTGGACATGGTCGCTAGTGCCATCCTGGGCGCCATAGAAAGAGAGAACCTGGAGAGAGTCATCCAGGAATACAGCGAGGCGCTGGAGGAGTTTAGACCAGCCTCCGAGCAGTATTTGGAGAATATTGGCAATATAACCCCAGACGCCGAAAGGAGGTGGAGAGCAGCTGCTGACCCAGGCGCACCCTCATGGAGCATAACTTTTGGGCCACTGGCCACACTGCTCAACCGGGAAATTAACACCGGCCTGCGGGAGATCTCTGTGGACAAGCAGAAGACCATCAAGGAGAACTGCGATATGCTGATTGACACCATCGGTAGCATCCAGGCGCAGGTGGTCCAGATTGACAGCTGCTTGAAAGAGAAGCTGGAGCCGGAGCTCCACAAGGGGGCAGTGCTCGGCCGCATCGTGGCAAGCCTAGGCCGGGTTGGCACCTGTGCAGTGTCCACAGTCGCCCTGGAAGTTTTGGGGTTGGGTGTGGACATGGTCGCTAGTGCCATCCTGGGTGCCATAGAGCGAGAGAACCTGGACAGATTCATCCAGGAATACAGCGAGGCGCTGGAGGAGTTTAGACCAGCCTCCGAGCAGTATTTGGAGAATATTGGCAATATCGTAGCCAGGGTCCAATTCAAACGGGGGCACTAA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008677 True 942 mRNA 0.58 3 8694842 8699781

Neighbor

gene id symbol gene type direction distance location
AMCG00008675 NA coding upstream 1012 8680333 ~ 8693830 (+)
AMCG00008678 NA coding upstream 25113 8668601 ~ 8669729 (+)
AMCG00008670 rab5b,rab5c,LOC108245972,LOC103393176,LOC107381932 coding upstream 310879 8369707 ~ 8383963 (+)
AMCG00008671 cdk2,LOC107570445,LOC107683630 coding upstream 330299 8357428 ~ 8364543 (+)
AMCG00008665 LOC103367933,LOC106456382,LOC108433351,LOC107714908 coding upstream 401325 8276771 ~ 8293517 (+)
AMCG00008676 NA coding downstream 24292 8724073 ~ 8727731 (+)
AMCG00008679 NA coding downstream 64550 8764331 ~ 8771848 (+)
AMCG00008684 ormdl2,LOC104952346 coding downstream 80972 8780753 ~ 8784879 (+)
AMCG00008683 LOC106581923 coding downstream 126266 8826047 ~ 8840517 (+)
AMCG00008685 NA coding downstream 166498 8866279 ~ 8881168 (+)
G50757 NA non-coding upstream 105714 8572729 ~ 8589128 (+)
G50698 NA non-coding upstream 425516 8269007 ~ 8269326 (+)
G50692 NA non-coding upstream 448010 8246577 ~ 8246832 (+)
G50668 NA non-coding upstream 504057 8189825 ~ 8190785 (+)
G50627 NA non-coding upstream 619838 8068760 ~ 8075004 (+)
G50823 NA non-coding downstream 103425 8803206 ~ 8809391 (+)
G50878 LOC100846954 non-coding downstream 294755 8994536 ~ 8994903 (+)
G50929 NA non-coding downstream 491996 9191777 ~ 9192377 (+)
G50930 NA non-coding downstream 492749 9192530 ~ 9192919 (+)
G50931 NA non-coding downstream 493234 9193015 ~ 9193685 (+)
G50747 NA other upstream 28294 8450166 ~ 8666548 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 370064 8278853 ~ 8324778 (+)
G50583 NA other upstream 755071 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 1378992 7296886 ~ 7315850 (+)
G50448 NA other upstream 1676717 6957611 ~ 7018125 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 382046 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 416894 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 610305 9310086 ~ 9316151 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 655311 9355092 ~ 9379579 (+)
AMCG00008725 NA other downstream 1215713 9915494 ~ 9937752 (+)

Expression


Co-expression Network