AMCG00008680 (pan2,LOC107671829)


Basic Information

Item Value
gene id AMCG00008680
gene name pan2,LOC107671829
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8730725 ~ 8756432 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008680
ATGATGAATCACTCGGGCGTCCTCATGATGAATTTTGATGGGCTGGAAGCCGGCATGGGCGATTTCCCACCCGCCATGCACGGCACCATGGACGCTGGGCTGGAGCCCCCGATGGACCCCCGGTTAGACCCCGGCCTGCTACAGAGTGTGGAGATGGACCCCGAGGGGATGGCCGTGCCTGTGTCCGACTCTGTGCACCTGCTGGAGGGCATGTTCTCTGAGCTGCATAGCGTGGTGGCGGAGGTGGGGGTGCCCGTCACCGCTGCCCACTTCGATCTGCATGAGGAGATGCTGTGGATGGGAAACCACCGGGGCCACGCCTCGTCTTTCTTCGGCCCCACCATGGGCCGCTACTCGTCCTTCCAGGTGCACTCCTCCGATGACATCCGTCACATCCAGAGCCTGGAGACCGGTGTCCTCTTTTTGTCCAAAAGTAACCTTAAGTGCCAGACAAGGGGAGGCCTCGTCATGTTCGATTATCAGATGGAGGAGGGGGCGGATATGCACAGCCTGCTCCTGACGGACAATAACACTGTGCTGCTGGGGGGGCTACAGAGCTACGTGGCTGAGGTGGATCTGAACACTGTGCAAGAGACCCAGAAGTTCACAGTCGAGGTCCCAGGCGTGGCCATCATGAGGCAGTCCAACCGCTTCTTCTTCTGTGGCCACACGTCTGGAAAGGTTTCTCTGAGGGACCTGCGCACATTTAAGATGGAGCAGGAGTTTGACGCCTACTCTGGCAGCCTGTCAGACTTCGACGTCCATGGCAACCTGCTGGCCACCTGTGGCTTCTCCAGCCGCATGAACGGCCTGGCCTGTGACCGCTTCCTCATGGTGTACGACCTGCGCATGATGAGGGCTATCACTCCGCTGCAAGTCCATGTGGACCCCCTGTTCCTGCGCTTCATCCCCACCTACACCTCTCGCCTGGCCATCATCTCCCAGACAGGGCAGTGCCAGTTCTGCGAGCCCACGGGCCTGGCTAACCTGGCTGACGTCTTCCACGTGAACACGGTGGGCCAGCTGCTGATGAGCTTCGATGTGTCGTCCAGCAAGCAGGCCCTGGCCTTCGGGGACTCTGGTGGCTGTGTGCACCTGTGGTCCGATGCCCCCGAGGTCACCTTCAACAGCTACTCCCGCGAGACGGACTTCGCCCTGCCCTGCCTGGTTGACACCCTGCACCACTTAGACTGGAGCCACGACCTGCTGCCTCTCTCGCTCATTCCCATGCCCCTGACCAGTGCTGAGCCCCTGCTGTCCGACTGGCCCACCTCCCTGGCTGCCCCCAGCCCCAGGTATCTGTGCCCCCCAACCTCTGTTTCAGGGGCGTCTTTTGTTTCGGTGCCCTATAAGATCAAGGAGGTGGAGCTGGAATACGACAGCTACAACCAGgtCACAATCAAATACTCCAAGCTGGGCCTAGAAGACTTTGATTTTAAGCATTACAACAAAACCCTTTTTGCTGGCCTGGAGCCCCATATCCCCAATGCCTACTGTAACTGCATGATCCAGGTGCTGTACTTCCTGGAGCCGATCCGCTGCTTGGTGCAGAATCACCTGTGTCAGAAGGAGTTCTGTCTGGCCTGTGAGCTGGGCTTCCTCTTCCACATGCTGGACTTGTCCCGGGGGGATCCCTGCCAGGCCAGTAACTTCCTGCGTGCGTTCCGGACAATCCCAGAAGCCTCTGCGCTCGGCTTGATCCTGGCCGACTCAGACGAGCAGACGGGCAAAGCCAGGCTGGGCCGTCTGGTGCAGAGCTGGAACCGGTTCATCCTCACCCAGCTGCACCAGGAGACCCAGGAGCAGGAGGGGCCCCAGGCCTACCGAGGAGCTGGCAACAGTGTGTTTGGCTCCTCTGCGGAGTCTGTGATCGGCAGGCTGTTCGGCTGTGAGGTGGAGAACAGCAGCCTGTGCCGCTGCGGCAAGGAGACGGTGCGCTCGTCCCTCACCCTGCTCTTCACCATGCACTACCCCGAGAGGAGCTCCCACGACAAGACGATCAAGGAGTACGACTTTGCAGAGATCCTGAAGAAGAGCATTTGTCTGGAGCAGAGCACCCAGGCCTGGTGTGAGAACTGTGAGAAGTACCAGCCCACCGTCCAGACACGCAATATCCGCTGCCTCCCAGACGTGCTGGTCATCAACTGTGAGGTGAACAGCACCAAGGAGGCTGAGTTCTGGAAAGCCCAAGCTGAGGACATGCGTCATGTGTGGATCCCACTCAGCCTCAAGATGACCATCAGCAAGACCAAGGGCCTGGAGGTACAGAACTGGACTGAGAATGAGGAGctcagctccgaagaggagacagagggggcCGTCATATATGATCTGGTAGTCACTGTGTCACACATCCTGGATGCCAGAACAGGAGGCAATCTGGTGGCCCATATCAAAGTGGGAGAGACCTACCATCAGAGGAAAGAGGGCGTGACTCACCAGCAATGGTATCTGTTCAATGACTTCCTGATCGAGCCAATAGACAAGGCAGAAGCGGCTCAGTTTGATATGATCTGGAAGGTGCCGGCCATCCTGTACTACGCCAAGAGGAACTACCACCCCAAATACGACCTGCGCATCAAGAACCCCATTGAAGCCAGTGTGCTGCTGGCAGAGGCCTCCCTGGCCAGAAGACAGAAGAAAAGTCATGCCACCTTCATCCCTCTGATGGAGGAGGCCGAGCTGCGCAGTGATGGCACTAAGTCCACCATCAAGCCCAGCCAGATGTCTGTGGCCCGGATCACCTGTGTTGTGGATTATCTGACCCAGTACTCGGGCATTAAACCTGGAGACTTGGACGCCAAGATCTCCTCCAAACACCTGACCACGCTCAAGTCCACCTACCTCAAACTGCGCTTCCTGATTGACACCGGGGTGCGATTTGTGGGTCATGGCCTGCAGAAGGACTTTCGGGTCATCAACCTGCTGGTGCTGAAGGACCAGGTGATTGACACGGTGTACCTTTTCCACATGCCCCGGAAGAGGATGATCTCCCTGCGCTTTCTCGCCTGGTACTTCCTGGACCTAAAGATCCAGAGCGAGACTCATGACAGCATAGAAGATGCCCGCACTGCCCTGCAGCTGTACAGGAAGTACCTGGAACTGAGCCGAGGGGGCAGGAATGACGAGGTGCGCAAAGTGCTAAAGGGGCTGTACGAGAAGGGCCGCAAGCTGGACTGGAAAGTGCCCGACTGTGAGGGGGCAGACAGCCAGGGCAGCCCCAAGAATACTGCCGTGTTCCCCTCTGTGATGGGAATGTGAGATGGATGGACAGCCAGGCCGACACAACAGGAAGGCCAAAGCACAGAGACGGAcgcatttttaatgtatttaaattcctTATTGGCCAAATTAATTTCAGACGTGCATTTGGaatgtaatagaaaaaaaaggcagatattttctcttcatttatgatttatttttgtgactttttattGAAGGGGACTTTATTTCCACAGGTTAGAGTGTGTCAAATCCAGTGTATATTTCACCTTCACATACCTCCTCCCTATAAAAACTGGTAACTGCCACTCCTTCCCTTCTGTCAACTTGACTTCCTTGCCTGGGTGTGCCCTAAAGAGGATTTTGGGAGACATTTGAAGGCAGTTCTGATATTGTTCAGATCTGATATTCTGATCAATGTCTACCACTACTTCATGCAGAATAATCTTTAGGTCCACAGTTTGTACATCAAATGAATGCGGGTATGGTTTGAGGGCCCAATGCCACCCCACATACTTTTGAATCAAATCTAAAATCTTTTCACTATCTTAGAGGACCTGTTTTCCATGGGTGTTGAAGACTTGTAAGGCTCGGGAGATCTGCCAtgcaaaaaaatgtacttttaagggatatcaattttaaaatgacttcagGGGAAGATagatatttttaatacttgAATGAGCAAAGATCTTAAAATAgaattaaaggaaacaatctAGGGTTCATGAGGGTTCATTAGTGAAGACCAGTCTGAAGTTGACTAAAATCATTCTTTGAAATTTGTCCCCCAATGGACACGAATGCATTCCATTCTTTATTGTATAGTTTATAGATCACCCAGTATTGAACAGTACCCGGTGGCTATCTTCTCCCCATCCACACTTATGACTGCTCTGGGGACCTATTTATGAACCAATGAACTGCACTTGTACAGaatgaattttgttttaaaaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
pan2 Predicted to enable metal ion binding activity; nucleic acid binding activity; and poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of PAN complex. Predicted to be active in P-body. Orthologous to human PAN2 (poly(A) specific ribonuclease subunit PAN2).

NR:

description
PREDICTED: PAB-dependent poly(A)-specific ribonuclease subunit PAN2-like

GO: NA

KEGG:

id description
K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008680 True 4201 mRNA 0.54 24 8730725 8756432

Neighbor

gene id symbol gene type direction distance location
AMCG00008682 NA coding downstream 13399 8701778 ~ 8717326 (-)
AMCG00008681 NA coding downstream 72165 8635800 ~ 8658560 (-)
AMCG00008674 NA coding downstream 164881 8550569 ~ 8565844 (-)
AMCG00008672 NA coding downstream 226029 8502700 ~ 8504696 (-)
AMCG00008673 NA coding downstream 272771 8456517 ~ 8457954 (-)
AMCG00008686 dnajc14,LOC107737354,LOC107683641 coding upstream 34831 8791263 ~ 8801324 (-)
AMCG00008687 NA coding upstream 49344 8805776 ~ 8819446 (-)
AMCG00008689 NA coding upstream 126062 8882494 ~ 8892523 (-)
AMCG00008693 NA coding upstream 140305 8896737 ~ 8901751 (-)
AMCG00008691 NA coding upstream 157506 8913938 ~ 8916096 (-)
G50784 NA non-coding downstream 156387 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 346718 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 369763 8357450 ~ 8360962 (-)
G50711 NA non-coding downstream 405950 8278752 ~ 8324775 (-)
G50657 NA non-coding downstream 592664 8137475 ~ 8138061 (-)
G50836 NA non-coding upstream 80927 8837359 ~ 8840655 (-)
G50915 NA non-coding upstream 387912 9144344 ~ 9149938 (-)
G50999 NA non-coding upstream 620140 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 624319 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 631826 9388258 ~ 9388608 (-)
G50788 NA other downstream 70708 8656728 ~ 8660017 (-)
G50739 NA other downstream 359395 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 436371 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 437239 8281215 ~ 8293486 (-)
G50710 NA other downstream 461399 8269023 ~ 8269326 (-)
G51008 NA other upstream 634411 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1581893 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1804434 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1914517 10670949 ~ 10718201 (-)
G51241 NA other upstream 1919324 10675756 ~ 10712485 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021799 pan2 coding NC_007134.7 CM002907.2 31979602 ~ 32007818 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_13266612_13285039 PAN2 coding CI01000001 null 13266543 ~ 13285293 (+)