AMCG00008685


Basic Information

Item Value
gene id AMCG00008685
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8866279 ~ 8881168 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008685
ATGACGGAGCAGTACATTCTAAACCTGAGATCATTGTGGCAGGGGCTGGGATGGTTAATCCAGcTCTGTGGCCTGGCTCTGATTGTGATTGGTGTGCTGGTCCAGATGAGCCTCCAGAACACCCTCCGCATCACCAACGCCTCTGCATCCGGAGTCCCCATCGTGATCATCTCGGTTGGCGTGGTGATCTTCTTCATCGCCTTTTTTGGCTGTTGCGGGGCCTGGAAGGAGAGTGCCTGCATGGTCACCATGtTCGCTATTCTCTTGACCCTCATTATCCTGGTTGAAGTGGCTGCTGCCATCGCTGGATACATCTTCAAGGACAAGGTCCGAGGGATCTTGACCGAAAGTTTTAGGGATCTGGTAAAGACATACCCTGATAAACCGGAAAACAAGAAGGTTATGGATGACATGCAGAGTGAATTCCACTGCTGTGGAGCCCTGAACGCCTCAGACTGGCAGAACAACTCTGTGCCCGACTCCTGCTGCAAGAACGTGACTCTGGACTGTGGGAAGAACGCACAGCACACCGACAAGATCTACAGCACGGGCTGTGTGGTGGTCCTGGAAAACTGGATAAAGAAGAACTTGGTGATTGTGATTGGAGTGGCTTTGGGCATCGCCTTCTTCGAGATCCTGGGCGTCGTGTTTGCCTGCATGCTCATGAAGGCCATCCGCAGCGGCTACGAGGTCATGTAGGGGCGCTGTGTGCCCCGGGCCCCCgaacacaacacaatgtgcCAGCATTCTTGAAAACTTCACAAAGTCCAATCCCTGCTACATTATTTCACAAAGCAGAAATACCATGttgctttttatacattttccccccccccccccccccccttcccttttGTGCAATCACACTCTTTTCTGTCTTTACTTCTGTATCATTAAGATTGTAAATTAAGCAAAATTGTACCTGGAGAAATGGAGCGGGAGTCTGTGTGGGGGGTAGTTAATTGTCTTGCATCTTTATGGGGTTCTGTAATTATCTGCTTTTGAATGGAATAGACTATATTGGAGAACCAGCCTTATTAAACCACCAGTAGATATTCTCAGGTTCTTGCCTTGCTCTTCtagatttttgcattttatatttttattgtatcttGAGTTCCCTTACTGCTGTCTGAGTTGCAGAGTCCCTGTGATCTGAATTGTTCTATTgtttaattggaaataaaattTGAAACATCCAATATCCGGATCGGCAGTGTGGGTTTGTACCGGACATGGCTGGTACACCTGGCCAGGGTAGGATCCCAAACTTCCCAGGCTGGCTTCCACTCCCATTTTGAATTTTAGGGAGAACAACATGAATACAGCCTCTATTTATTACCATCTGTGAAACATAGGTGATTGATTCTAAAGGGGTATAGTTCTGCAAAGAAAGGCTTTCTTAATAAAAATGGTCATCCCACATGGGAAGTGGCTCAGTGGAACAGCTGTGTGAGAGACAAGGTCATTGTTCAACTAGTTTTTCCTTCTGCTGCAGGTCCTCAAATGACCACCTTTGAAATGTTGAAACCTGCCATTTTAGAGGACTTCTCCCTTGCACCTTtacactgttgtgtttgtgtgggtggtttctgtatttttcctaTGACGTGAGTTGCTAAAAGTAGGTCCTCACCCCGGTCTCTTTCTGACTGAAGGGGGAACTTAAAATACAGGTGCTCAACAGTAAAGTACTTAAGATTAGGATTTCAGTTTGCCTGAGGCTGCAAAGATTCATAAACGCAAACACGGCAgcctacattaaaataaaatattccctGAAATACTTGTTCATGGTTTTACATGAAATACAGTCCCTGAGTTTCATTCCTCTGCAGAATGTGCTCCCATTccaaactggtatctgtggtAGTTCTCCATGTTGCAAAAGAACAGAGCCAAATTCAAGTGTGTGGGGTTTGAGGGTGGGGGTCAGGCTGTGGTCCAACACTTGGATCTTTTGCTGGACTGAAACAACTTTTGAATGCACAGCCCTGAAAAGtgatcaaatgcatttatatgttgctgctgccatctagtggttTAGATTGGTCACAGCCACATTTGCTGAAAGGTGCATTTTGTAGCTCAATGTTCAATGCAGTTTTAAATGGGacataaagcattttttatGTTCTAAACCACAAGCTGTGGTGCTTAAATGGAGACACGGTCTAAAGATTGACTAATTTAAGCCAATAAATGTACCCTGGACTGGAGCTCCTTCCAAAACCAGGGCTGAAGGGTCTGGTGCTGAGAAGTCTAACACCtgtaaacagaataaataagcTTGGCAGCTGTGTAGGAGAAGGATCATGGTGTCTTTTACTACACAAAGAGGATTCCTTGGTCAATAATAAAACTTATGCCCAGTTTGAGAAAGGGGTGACTGGTACCCGTGGTGTCTGAACCCTGTTGAAGGACGGGGCTCCAGGAGCACAGCTGAGCAACGTATATACATGCTGCCATGGCAATCAAATACTCTCGGGATGTGTGGAGATCAGAGCCGTTCACTGACCAGAGCAGGGCTGGCACGCTGCGTCTGTACACCCGTCCACATGCGAGCAGATCAGAGTCGGGAAGAGCTCCATGTGGCTTGGGGGAAATTTGTTACAAAGTATTGTGGTGTGATTTGCTCTTGTGTGGCACAGTGTGCCACTTGCCAGCCTGCAATGCACTTGGGGGGAGAGGCACAGATGTTTGATCTGGGCAGGCTGATTTCCTACTTGCCAGGGTGGAAAAAACTTGACatgaccaaaaaataaatttctATGATTTTG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06497 CD63, MLA1, TSPAN30; CD63 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008685 True 2780 mRNA 0.46 7 8866279 8881168

Neighbor

gene id symbol gene type direction distance location
AMCG00008683 LOC106581923 coding upstream 25762 8826047 ~ 8840517 (+)
AMCG00008684 ormdl2,LOC104952346 coding upstream 81400 8780753 ~ 8784879 (+)
AMCG00008679 NA coding upstream 94431 8764331 ~ 8771848 (+)
AMCG00008676 NA coding upstream 138548 8724073 ~ 8727731 (+)
AMCG00008677 NA coding upstream 166498 8694842 ~ 8699781 (+)
AMCG00008688 NA coding downstream 22046 8903214 ~ 8913342 (+)
AMCG00008695 NA coding downstream 242073 9123241 ~ 9132238 (+)
AMCG00008701 coq10a,LOC102221461,LOC106917050,LOC102797363 coding downstream 294452 9175620 ~ 9184530 (+)
AMCG00008700 NA coding downstream 389194 9270362 ~ 9282607 (+)
AMCG00008706 NA coding downstream 409520 9290688 ~ 9309599 (+)
G50823 NA non-coding upstream 56888 8803206 ~ 8809391 (+)
G50757 NA non-coding upstream 277151 8572729 ~ 8589128 (+)
G50698 NA non-coding upstream 596953 8269007 ~ 8269326 (+)
G50692 NA non-coding upstream 619447 8246577 ~ 8246832 (+)
G50668 NA non-coding upstream 675494 8189825 ~ 8190785 (+)
G50878 LOC100846954 non-coding downstream 113368 8994536 ~ 8994903 (+)
G50929 NA non-coding downstream 310609 9191777 ~ 9192377 (+)
G50930 NA non-coding downstream 311362 9192530 ~ 9192919 (+)
G50931 NA non-coding downstream 311847 9193015 ~ 9193685 (+)
G50932 NA non-coding downstream 313236 9194404 ~ 9194638 (+)
G50747 NA other upstream 199731 8450166 ~ 8666548 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 541501 8278853 ~ 8324778 (+)
G50583 NA other upstream 926508 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 1550429 7296886 ~ 7315850 (+)
G50448 NA other upstream 1848154 6957611 ~ 7018125 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 200659 9081827 ~ 9087967 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other downstream 235507 9116675 ~ 9122812 (+)
AMCG00008710 NA other downstream 428918 9310086 ~ 9316151 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 473924 9355092 ~ 9379579 (+)
AMCG00008725 NA other downstream 1034326 9915494 ~ 9937752 (+)

Expression


Co-expression Network