AMCG00008687


Basic Information

Item Value
gene id AMCG00008687
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 8805776 ~ 8819446 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008687
ATGGCGGGAGAGATTAAATGGAGAGTGAGGTTTGACTTTAAAACAGCGACAACGGCCtcttttcttctgtgtttcGTGTTGTATTGCCTCCCATGCGAGACGTCAGGTAAAGAGCTGTCCATCGTATCTATCCAAGATGGACAAGAGATCAAAAGGTTTCAATCTCAGGACTTCTGTTACTACAACCACCTGGTGCCTGGCTGGAAGGAGACGTGGACTAGAATACAGATTCGCGTGCGCAGCTCTAAGCAGCTCAAGGTGACGGTTGTGCAGGACGAGGAGATGCTGAGGGAGTTGCAGCAGTTCAGCCTGTGGACTCTATTCAACTATTTCCTGAAGGAGCACTCCAATGAAACCACCATCGGGGTCAGCCTCTTCAGCAACAAGACCTGCTTCCGGGTGGACCCCGCTGATGCCCAGGCTGGATACACTGTGCAGCTCCTTCGCAGATTTGACATTTACCTCTTCATGGTCTTCTTTGCTGGTCTGCTTCTGTTCTTCTATGCAGAAACACTGAGCAGGAGTCAGGTCTTCTACTACTCTGCTGGCATGAGTACAGGAATGATCGCCTCCCTCGTTATCCTGATCTTTGTAGTGGCCAGATTCCTTCCAAAGAAAAGTCCCTTCTACATCCTGGTGGCGGGTGGCTGGTCCTTCTCGGTCTACCTCATCCAGCTGGTGTTCAGGAACCTACAGGTCATTCTGCGAGAGCACTGGCACTTCGCCATCGGCTACGTGGCGGTGGTGGGTTTCGTGAGCTTCGCAGTGTGCTACCGCCACGGCCCCCTGACTGAGGTGCGCAGCATCAACATCCTGACCTGGACGCTGCAGATCGCTGGGCTGCTCTTGGTCTATGCCGGCATCCAGGTCCAGCAGGTGGCACTGGCTCTCATCATCGCCGCTTTTTGCTCCAAAAACCTGGAGCACCCCATCCGCCTGGCCCTCACACTGTGGAGGAGGTTAAAGGGCTGGCAATGGTCCCCAGAGCCACCCCGCTTGTTGACGGAGGAAGAGTACCAGAAGCAGGCAGAGGTGGAGACACAGCGCGCCCTGGAGGAGCTGCGGAGTTACTGCAGCAGCCCGGAGTTCAGCGCCTGGAGGGCCGTGTCCAGACTCCAGTCCCCGAAAAGGTTTGCAGACTTCGTGGAGGGCTCCCCGCACTTGGACCCCAACGAGGTGTCGGTGCACGCACAGGAGTACAGCTTTCTCTTTGACGATGAGGAGGATTTTgaagatgaagaggaggaggaggagaatgaGAGGAGGGGGTGGAAGCGTGAGGAGCTGGCGATGGATTTGCCGAGGAACCACAGGTCTCTGTGAGAGCGCAGAGGGCACCGCAGCCTAGGTGTCCATACAGCTCCCTGCCCTCCACCCCTCAACTTACCCAGACTGCACTCATACAACGCTGGGCAGGTTACCCGCcagagcctgtttttttttttacaaaacaggATTCAATGCCTTAAGAAGGGGTGAGAATACCAAAAACTCCTGATAGGCAAAGACAATCAATCTCTCTTTGTGCTCTAGTCCCAGatgaatttattttcccttgTGTTAGATCTCTGCCTGAAAATGGTTACAGAGTACTATATACTACTTTGTTTGATACTGTAGTCCACAAATAACACCACTATAGTTTGAGATCTTTATCATATTTTTAACCAGTCTCTGATTGGCTACATCTAgggcaggggtgtcaaactccagtcctggagggctggaatgtctcctgtttttatttttttcagcccACCTCTCGTCTTGTCTTCATTGGTCTAATGATTAAGTGGATGATTTGAAACTTCTGTCCAGATGCTGAAATCTCATTTGTTGTGCCCCCTTtgggactggagtctgacacctcTGATCTAGGGAACCGAAAAAAGGCTTTGGTTTTTGAGGTACAAAAATTGTGCCCCCACATTAAAACCagataccattttttttttaaccatttttgcTGATGCAACGCCTGAATGGGGAGacggaaaaaataaaataaaaacagtcattTTTACTTATTGATTTAAGTACCCTGTTTTATTATCTATCTTATAACTGCAGATGTTGCGGCAACTCCTCAATTCCAAACTTTCTGCCAGTGGCCTTTTTCCATATCTACTGTGGCACCCTTCTGCATCAGAGTGTCTTGCCAATTCTGAATGGGATCTTTAGCATTCGGCCCGGAAACAAGCTGGATAGCACAGGGCTTCAGAGCAATGTATACAGTAATGTTCATTTGCCTTTCATGTTTTCTCATGCCTGGGGTCTGGTGCATCTCCTTTTGTCTGGATCCTtttgagatttttattttgttgtctctGCATAGAGTTACGTATTCAACCCATGAATGGATCTTGATTTATTGGACttattttaagtattgtatTAATTAGGCCTATTTATAACCTGAAAAGTCCTTCAGATTAGTGAAAAACTACTCCGTCCATCCTTCATTCCCACAATATAAAACCCCATTATAAGCATGTCTGCTTATTTAATCAATATACCTTGATGATTCAGAAAGCAGTCTCTTGGTAGAGGGTATTTCTAACCCCATCCATGTTTTAAGAGTGTAATTTAGTTAAGGAAAGTCAATGGccagtttttcaaatgtataatttgtatcagcttaatttaaaatgggcAATTCAAACGAGACCCAGGGGTAACCCCCAGAAGCGAGGTTTAAGCTTCCTGGTAGAGATTATTCAATATCCATTTTGAGAGAAGCTTTCTGGCACTAAGTGGATAGAAACGTCATGGGGAATTCTAAAAGTGTGACACCTGTGTCGCAGTGGTAAGTTCCCCCCACTAGTTTAGGCATGGCAAGTTGAAGCCCCAACTCAGGAATCATCAGCTCGAGCATCGATTGCCAGGGAGATGCATTAGTTCTTTCATGTGCTTTGGCAACTCGTTTTCGGCCCTCGAAGTTTAGGAGAAGGTGCTGGCATTTATACGGACCCCAacctttttcccccttttgtGTGACCAACACATTGTAAAGGCATCTTTCTGCATCACTTATCAATTGCATGTGTTGCAGCATTTCATTGAAAAACTTTTCAATTCACCGTCTTTAAAATGCTAATTCTGGATAAGGATTTCCGGGCTTAGGACCACTCTCTAATACCATGCCAAGAAAGCAATTGATCTATCTGTGGTTCTGGTTCTTACATTCTCATGAACAAGCATAATTCTCCAGCTGCCCATATCCAGTGAGTATTGCTGCCCTAAAGTATTCAGTGTCTAAAGATAGCCGAACTGGGTGTGAATGTAAAGGATTACCAAAGTGCAAACTGAAAGAAATTAGCATGCAGTCGGTGAATATGAAATGTTTACAAGGTtgagatacatttatttttattactgttatttttgtcttatgttttggtttagttttatcCACATAGTGTTTGCAGTGTTGAGTGCTCTGATTAGGATTATTTCTGGTTTCTggcatttgtctttttatatgtattctgtgctgattttacctttttttatatatatataaaaaaatcttgctgctataaatgtttaaacaactttttttttgtttttaatccgtCTGTCTTGATTGAGCGTCTGAATTCAATTCCATCACCCCAGTTTGAAGTTTTAATCAATCACATTACTTGATCACCCTTTCCCTCCCGATCCTATTTTAACTGCCTTACATTCTTGCTCTTTGCAAGATTTAGCTTCTATCATGCCAGTTTACTTGCTGTGTACTGTTTTCAATCACAATTTAAACACCTTTCTCATAATTTGGATGCACATATTTAAGGATACAATTTTAAGGTAAGGCgcatcaaatacatattttttaaatgctgaaaacCAAAAGCCATCATTTTATGTATGTGCCTACTATGCATGTATCCcccattcattattattattattattattacttgtactattatgtattttaattgttgctTTGCACATTCAGATCATGCAAGTTTAGCTCAGGCTGCCATGCTTGATCCACAGACGTGTTTGTCGGTAAGCTTTACCCATGTTTACattgttcttgtttgtgtttttccccattGGTTTAATCAGTCATCCTATTTCCTACTATTGTGATTTCTTCACACTGCAAGTCCCACACATGACCTGCCTGTACATTTCtgaggatgtgtgtgtgctgtctACATCTCTCTGTGTTAGTGTTTGATAACTCAattggcatttattattttttaacttttaagatAAATTGCCAATTGAAATCAAATCTCACCCTCTATTTGTAAACTACAGATCTGAACTTGACAGAGGCTATGTTTATAAGTATTCGAAAGATGCACCTGACAAAAGTTGACTTCATCCTTGCCAAAGCAAAGCGCTGGTGGCTTCAGAGTCCGAGTTGACCATATCCCTTTGCCAGGTGAATATGCACATTTCCTCTATGCTGGAGAAGAATCTACAACTCGCTCACTGGCTTCACATTGATGTTTACAGCCTGAAGCAGCAACCTGGTGAAAACGGACATCCTATTCTCTCTAGACGCCCTTCTTATAATCTAGTACAATCTAATTTGTCTAATTTTCTCATGATCGAGCAAAGAGAAATTCGAGACCTGCCATTGCACTTTGTCCCAGCTCAATACAAGGGCCCATATGTTCCCATATGCATGTCACTCCACTTCTCTGTGCTTTGGAAGGTAGAACTGAGGCCCTTCTGTGTAGATTTAGAGAACCTTGGAAGTATCCCTGTGCCAGGTGTCTATAGTCTATTTAAGTCACTTTAGATAATTGCATTTGCTTTAAATCTGATTATTGAAAGCAATCTGTTAATTGGGGTCTGGAAGGGGTGTGAGCCCTTGCAAAGCGGTGCTGTTTATCTAGTATAGAAGCTTGGGCAATTTTACTACAGGGGTGTCGGACCCCAGCTCCAGTCCTGGGCTCCTACAGTGTCTTCTATTCTGGTTTTTGTGCCAACAGGAGCTCTCCCTCATTCTATTGaacattttcagcttttgtCTTTTACAGCTGATAGTCagatttttggttttggttttggtttttgtcgtttttttaaagcactctAAAACCCCAGTTAGACTGTAGCCATCCAGGATCTGACTGACGCTCCACTGAGGTATACTGTGGTGGTAGAAATCCTAAGATGTCTTAGAGCATCGCTGTCGTTTCATTGCGGAGGttaaaatactttcatttttgcttttctttgaatTTTGTGAAGATtgtaaattgtatgtatataattttaatattttcacacaTTGGGGTGGGTAATGTACATATCAGATCCACTGTTTCTTACTGAAAGGTttggatacaaataaattattttaaatga

Function

GO:

id name namespace
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008687 True 5340 mRNA 0.43 9 8805776 8819446

Neighbor

gene id symbol gene type direction distance location
AMCG00008686 dnajc14,LOC107737354,LOC107683641 coding downstream 4452 8791263 ~ 8801324 (-)
AMCG00008680 pan2,LOC107671829 coding downstream 49344 8730725 ~ 8756432 (-)
AMCG00008682 NA coding downstream 88450 8701778 ~ 8717326 (-)
AMCG00008681 NA coding downstream 147216 8635800 ~ 8658560 (-)
AMCG00008674 NA coding downstream 239932 8550569 ~ 8565844 (-)
AMCG00008689 NA coding upstream 63048 8882494 ~ 8892523 (-)
AMCG00008693 NA coding upstream 77291 8896737 ~ 8901751 (-)
AMCG00008691 NA coding upstream 94492 8913938 ~ 8916096 (-)
AMCG00008690 NA coding upstream 122054 8941500 ~ 8941823 (-)
AMCG00008692 NA coding upstream 138832 8958278 ~ 8967884 (-)
G50784 NA non-coding downstream 231438 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 421769 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 444814 8357450 ~ 8360962 (-)
G50711 NA non-coding downstream 481001 8278752 ~ 8324775 (-)
G50657 NA non-coding downstream 667715 8137475 ~ 8138061 (-)
G50836 NA non-coding upstream 17913 8837359 ~ 8840655 (-)
G50915 NA non-coding upstream 324898 9144344 ~ 9149938 (-)
G50999 NA non-coding upstream 557126 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 561305 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 568812 9388258 ~ 9388608 (-)
G50788 NA other downstream 145759 8656728 ~ 8660017 (-)
G50739 NA other downstream 434446 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 511422 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 512290 8281215 ~ 8293486 (-)
G50710 NA other downstream 536450 8269023 ~ 8269326 (-)
G51008 NA other upstream 571397 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1518879 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1741420 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1851503 10670949 ~ 10718201 (-)
G51241 NA other upstream 1856310 10675756 ~ 10712485 (-)

Expression


Co-expression Network