AMCG00008696 (nabp1,LOC106565411,LOC106575791,LOC107675336)


Basic Information

Item Value
gene id AMCG00008696
gene name nabp1,LOC106565411,LOC106575791,LOC107675336
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9116675 ~ 9122812 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008696
GTCAGGACGTGCGCGTACCCGAGTCTCTGTTCTGATTGGCCCGAGCAGTTCAGGCCAGTGAGTGGGGCAATAACAGGGAGGCTGCTGCCAAAAACTGCTCCGGCGAAACACAGTCAACTGCATTGTCGCCAATCACTGAATACCCGGTGGGAGGCTTGGCTACCGGAAGACGATTATTTTGTAGTGTCGGCTGAAACTCCCAACAAGTTGTGATCTAACGTCCGACGTCTTACTTCAGGCGACGATACTCAGGGGAAAAAAGCGCCCGACTTATGCAAATATGCATTGAATATTAAGGCAGCATAGAAACATAACTCGCCCGGAACAGAATCAAACCGACACAGAATTCCACTAACAGGGTAGCTGGTGGAGGCTGGAGGGGTGGGAGCGGGAGGGGGTTGCTGGGTAAGGTCGGGACTGAAAGATGACGACGGAAACGCACGTGAAGGACATCAAGCCTGGCCTCAAGAACCTGAACGTCATCTTCATCGTTCTGGAGACAGgacgagTGACGAAGACCAAGGACGGGCATGAGGTGCGGACCTGCAAGGTGGCCGACAAGACAGGCAGCATCAGCATCTCGGTGTGGGACGAAGTGGGGGGGCTGATCCAAACAGGAGACATCATCCGACTCACCAAGGGgtaTGCTTCAGTTTTTAAAGGCTGTCTCACTCTGTacacagggagagggggagagctgCAGAAGATTGGAGAGTTCTGTATGGTCTATTCGGAGGTGCCCAACTTCAGCGAACCCAACCCCGAGTACTTGACGCAGGTCAATAAAACATCTCTGAATGACCAGGGAAGCTCCTCTCACAGCAACAGCACTCCTGCCGTCACAACTGGAAATGAGACCACCAATGGGAACGGAGTAAGCGCCCCTGCTGCCACCACCTCCACCAATCCCCAGCAAGCAGTGCGGAGCAGCACCCGTGGGGCGGCCAATCAGGGGGCGGCTGTGGCGGTCAGCAACGGCAAGGAGACGCGCCGCTCAGCCAAGAGATGATTGGACCAGGGGGCAGGCCCCTCCCACACCAGCACCCAGGAAATAAATAGGCTAGGATTTTATAACCTGCATTGGGTCTCCACTGAAGCCTTTTATCCCAGTCCTTCACATCCAAAAAAACTCACCTGtagctctggtcctggagatccACTCTGAAAGACTTCAATAGAgcaattatttttgcatttattagaATTTAATGCATTTCCCAGATCACTATATAATTACCACATAAAAGCTAAAGGCTCTAGGACAGAGGCTCTCTAGGACCAGGGCAGGAGGACCCCACCCCTTGAACATACAAGGTTCTTGACTCCTGATATACCAGATACTCTTTATGGTGCTGTTTCTAAATCATCACTGTTATTACACAAATTACACACGCCTTGATAAACTTTCTATTCCTAAAATGCAGATATGTATACACAGAACCCTGCCATGTTAAAATCATCGCATAGTTGACAAAGATCAGATTAATGTGGCACAACACTCAGCACTAAAGGGAGcagccacaaacacacaggtagCTGTTAGCTGGCTCCTTGTGCATCCTGCAGGGGCAAGGCAGATATTTATGCCACTGGGGGCTGAAGTGCTGTGGTGGGAAACTGCAGCTCCA
>TU63657
TGGGGCAATAACAGGGAGGCTGCTGCCAAAAACTGCTCCGGCGAAACACAGTCAACTGCATTGTCGCCAATCACTGAATACCCGGTGGGAGGCTTGGCTACCGGAAGACGATTATTTTGTAGTGTCGGCTGAAACTCCCAACAAGTTGTGATCTAACGTCCGACGTCTTACTTCAGGCGACGATACTCAGGGGAAAAAAGCGCCCGACTTATGCAAATATGCATTGAATATTAAGGCAGCATAGAAACATAACTCGCCCGGAACAGAATCAAACCGACACAGAATTCCACTAACAGGGTAGCTGGTGGAGGCTGGAGGGGTGGGAGCGGGAGGGGGTTGCTGGGTAAGGTCGGGACTGAAAGATGACGACGGAAACGCACGTGAAGGACATCAAGCCTGGCCTCAAGAACCTGAACGTCATCTTCATCGTTCTGGAGACAGGTGGAGATGGGTCAGGTTAAGGAGGTGACAACAGCTGGGGCTGGAATGACCAACCATCCAGCAGACACCACGAGGCCTCCCGGACCCAGGCCAGGGAACCGCTCTCCGACTGATTGTAAGGcgtcgggggggggggtgaagagTAAATGGTGTCGtctgtctttgtgaaggacgagTGACGAAGACCAAGGACGGGCATGAGGTGCGGACCTGCAAGGTGGCCGACAAGACAGGCAGCATCAGCATCTCGGTGTGGGACGAAGTGGGGGGGCTGATCCAAACAGGAGACATCATCCGACTCACCAAGGGgtaTGCTTCAGTTTTTAAAGGCTGTCTCACTCTGTacacagggagagggggagagctgCAGAAGATTGGAGAGTTCTGTATGGTCTATTCGGAGGTGCCCAACTTCAGCGAACCCAACCCCGAGTACTTGACGCAGGTCAATAAAACATCTCTGAATGACCAGGGAAGCTCCTCTCACAGCAACAGCACTCCTGCCGTCACAACTGGAAATGAGACCACCAATGGGAACGGAGTAAGCGCCCCTGCTGCCACCACCTCCACCAATCCCCAGCAAGCAGTGCGGAGCAGCACCCGTGGGGCGGCCAATCAGGGGGCGGCTGTGGCGGTCAGCAACGGCAAGGAGACGCGCCGCTCAGCCAAGAGATGATTGGACCAGGGGGCAGGCCCCTCCCACACCAGCACCCAGGAAATAAATAGGCTAGGATTTTATAACCTGCATTGGGTCTCCACTGAAGCCTTTTATCCCAGTCCTTCACATCCAAAAAAACTCACCTGtagctctggtcctggagatccACTCTGAAAGACTTCAATAGAgcaattatttttgcatttattagaATTTAATGCATTTCCCAGATCACTATATAATTACCACATAAAAGCTAAAGGCTCTAGGACAGAGGCTCTCTAGGACCAGGGCAGGAGGACCCCACCCCTTGAACATACAAGGTTCTTGACTCCTGATATACCAGATACTCTTTATGGTGCTGTTTCTAAATCATCACTGTTATTACACAAATTACACACGCCTTGATAAACTTTCTATTCCTAAAATGCAGATATGTATACACAGAACCCTGCCATGTTAAAATCATCGCATAGTTGACAAAGATCAGATTAATGTGGCACAACACTCAGCACTAAAGGGAGcagccacaaacacacaggtagCTGTTAGCTGGCTCCTTGTGCATCCTGCAGGGGCAAGGCAGATATTTATGCCACTGGGGGCTGAAGTGCTGTGGTGGGAAACTGCAGCTCCACTACTTTTGGGGTGGGTGGGAGGGCAGATTAATTTTATTACAGCAGGGCTCCTATGCTTTGCCCACTTTATATTTGGTAGCATTTTTAAAGgagcattaaaaacaatcccCTCGCAAGTGGCTAGGTCAGTTGTCTGATCTCCAAAATGGCGGCGAGTGACAGACAAAATATCCACATTTTATCAGTCTCATGTGTTTCCATCACTTTAAGGAAACGGCAGCGGGTTTgtcagtaaaaaaaatgttttaaatctagAAGATTTTGTAGCTCAGCCTGTGCCTCAGGATTGGTTACATCACCATTTTCAAACTGACTGAAACCACAGTGAGCCATCCGCGTCTTTTCCCAACATTTGCATGCATTCCCCGAGGCAGCACTGTGCTCAGATGACAGCAGGCCGAGACACTTCCAGAAAACTCTCAAACAGACTAGGAAATGGAGGAAGTTTCAAAACATTGGACTTTTGCCCCCACCAGCAAACAGATTCCGAACTTCACTCAAAAAAAGATGCGTGTCTTCGAGCTGTGAGACCTTCTCACTGCAAAGTTGTTAAGCGGAACCACCGTGAATTAAGATggaatattttgtttccatcaGCCTTGGGGAGAAAAGATACTAAGTGAACCAAATTAATTGTTATTAGATCTGTGTGAAAGACTCTCAAACTCAACTCCTGGGGGGCTACACTGATTCTGCATACaccacttttatatatatatatatatatatatatgtcttaaagagattaaaaagtaTGGTGAAATGCTTTCTGACTTTTCAGGACTAAACATCTGTGCTGTTAGAAATATGACGCGTAGTAATGCTTCTTTATGACTGCCGATTTTCCATCCTTTGTGTTCAGCCCTCATGATACCAGTGTAAAATGTCACTGTCACATGCCATTCTTTTGAAATACAGCGGCTGGATTTGTTGAAAACCTGTGTGGGATTTCTGTGTGTCacgtgtgtgttttaaaagtgagagggggaaaaaaatgtggctaggatttattatttatttattagcagacataGGTCTCATACTATCTTTCAGCACAGAAACCATACTTACACCAAACAATGCAATTTCAAGTGAGGTGTCAAAAGCTGAATTTAC

Function

symbol description
nabp1 Predicted to enable single-stranded DNA binding activity. Involved in double-strand break repair via homologous recombination; mitotic G2/M transition checkpoint; and response to ionizing radiation. Located in cytosol; nucleoplasm; and site of double-strand break. Part of SOSS complex.

NR:

description
PREDICTED: SOSS complex subunit B1-B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008696 False 1628 mRNA 0.51 7 9116675 9121667
TU63657 True 2853 TUCP 0.47 8 9116737 9122812

Neighbor

gene id symbol gene type direction distance location
AMCG00008688 NA coding upstream 203333 8903214 ~ 8913342 (+)
AMCG00008685 NA coding upstream 235507 8866279 ~ 8881168 (+)
AMCG00008683 LOC106581923 coding upstream 276158 8826047 ~ 8840517 (+)
AMCG00008684 ormdl2,LOC104952346 coding upstream 331796 8780753 ~ 8784879 (+)
AMCG00008679 NA coding upstream 344827 8764331 ~ 8771848 (+)
AMCG00008695 NA coding downstream 429 9123241 ~ 9132238 (+)
AMCG00008701 coq10a,LOC102221461,LOC106917050,LOC102797363 coding downstream 52808 9175620 ~ 9184530 (+)
AMCG00008700 NA coding downstream 147550 9270362 ~ 9282607 (+)
AMCG00008706 NA coding downstream 167876 9290688 ~ 9309599 (+)
AMCG00008708 NA coding downstream 216019 9338831 ~ 9350517 (+)
G50878 LOC100846954 non-coding upstream 121772 8994536 ~ 8994903 (+)
G50823 NA non-coding upstream 307284 8803206 ~ 8809391 (+)
G50757 NA non-coding upstream 527547 8572729 ~ 8589128 (+)
G50698 NA non-coding upstream 847349 8269007 ~ 8269326 (+)
G50692 NA non-coding upstream 869843 8246577 ~ 8246832 (+)
G50929 NA non-coding downstream 68965 9191777 ~ 9192377 (+)
G50930 NA non-coding downstream 69718 9192530 ~ 9192919 (+)
G50931 NA non-coding downstream 70203 9193015 ~ 9193685 (+)
G50932 NA non-coding downstream 71592 9194404 ~ 9194638 (+)
G50983 NA non-coding downstream 230166 9352978 ~ 9354405 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 28708 9081827 ~ 9087967 (+)
G50747 NA other upstream 450127 8450166 ~ 8666548 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 791897 8278853 ~ 8324778 (+)
G50583 NA other upstream 1176904 7933829 ~ 7939771 (+)
AMCG00008639 NA other upstream 1800825 7296886 ~ 7315850 (+)
AMCG00008710 NA other downstream 187274 9310086 ~ 9316151 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 232280 9355092 ~ 9379579 (+)
AMCG00008725 NA other downstream 792682 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 804575 9927387 ~ 9931515 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 1569565 10692377 ~ 10771675 (+)

Expression


Co-expression Network