AMCG00008698 (LOC105017093,LOC106583345,LOC106565408)


Basic Information

Item Value
gene id AMCG00008698
gene name LOC105017093,LOC106583345,LOC106565408
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9150060 ~ 9170282 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008698
ATGGTACAGGAATACGACTTTAAAGTGTGCAAGGCTATATTCAACCGGAACACCGAAGAAGTTCAATCGTTGTTGCACAAGAAGGAAGATGTCAATGCACTGGACCAAGAGAGACGTACTCCCCTGCATGCTGCTGCTTGTTTAGGCGATGTTCATATTATGGACCTCCTGATTAATTCGGGTGCTAGTGTTAATGCTAAGGACCACGTGTGGCTGACTCCTCTTCATCGGGCTGCTGCCTCTCGGAATGAAaaaGCGGTGGGCCTGCTGCTGCGCCAGGGGGCGGAGGTGAATGCCCGTGACAAGTTCTGGCAGACTCCGCTCCACGTGGCCGCCGCCAACCGGGCCACCAAGTGCGCAGAGGCCCTGGTGCCCTTGCTGAGCAGCGTCAACGTGGCCGACCGCACCGGCAGGACCGCCCTGCACCACGCCGCGCACAGCGGACACATCGAGaTGGTGAACCTGCTGCTCAACAAAGGGGCCAACCTGAGTGCCAGTGACAAGAAGGAGAGGCAGCCCATCCACTGGGCCGCTTACCTGGGGCATTTGGAGGTGGTGAAGTTGCTGGTGTCTCGCAGTGCGGATGCGGTGTGTAAAGACAAGCGTGGCTACACCCCCCTCCACGCTGCCGCCACCAGTGGGCAGATCGAGGTGGTCAAGTACCTGCTGAGGCTCGGAGCTGAGaTCGATGAGCCCAATGTGTTTGGCAACACTGCCCTGCACGTGGCCTGCTACATGGGCCAGGAGGCAGTGGCCAATGAGCTGGTCAACCATGGCGCCAATGTCAACCAGCCCAACGAGCGTGGCTGCACACCTCTGCACTTCGCTGCCGTCTCCACCAATGGCGCCCTCTGTCTGGAGCTGCTGGTCAACAATGGGGCTGATGTCAACATGCAGATCGACTGTGTGGATCAATATGGCAATACTCCTCTTCACGTTGCTGCTAAGTATGGCCATGAGTTGCTGATCAGCACCCTGATGACGAATGGTGCTGACACAGCCAGGCGAGGGATTCATGGGATGTTTCCACTGCACTTGGCCGTGCTTTATGGGTTTTCAGACTGTTGTCGCAAGTTACTGTCCTCAGGTCAGCTGTACAGCATCGTCTCGTCTCTGAGTAATGAGCACGTGCTGTCTGCTGGATTCGATATAAACACACCTGACAACCTCGGGAGGACCTGCCTACATGCTGCTGCATCTGGAGGGACTCCATTGCACTACGCGGCTGCTAACGGGAGTTACCAGTGTACGGTGACTCTGGTGAGTGCTGGCGCCGAGATCAATGAAGCTGACAGTAAAGGCTGCACAGCCCTGCACTACTCTGCTGCTTCCCAAACCTTCCGAAGAGTGGACAGACATTACTCCGGGAGCCATGAGAACGAGGaggagagagtgaaggagaCATTTTTTTGTTTGGAGTATTTGCTGGACAATGGTGCAGATCCAGCCTTGCGCAACAAACAGGGATATAGTGCAGTTCACTATGCAGCTGCCCACGGCAACAAGCAAAACCTTGAACTGctcttgGAAATGTCTTTCAACTGCTTGGAAGATGTGGAGAGCACCATTCCAGTTAGCCCACTGCACTTAGCTGCCTATAACGGTCACTGTGAAGCCCTGCGCGTGCTCTCGGAGACGCTGGTGAGCCTGGACGTGAGGGATGGTGCGGGCCGCAGTGCCCTGTACCTGGCCGCCCAGCAGGGCCACACCAACTGCGTGGAGGTGCTGGTCAGCCACGGGGCCTCTTGCCTCCTCAAGGAGCGACGCCACAAGTGGAGCCCTCTGCATGTGGCAGcTGCCAGCGGCCACACAGACTGCCTGCACGTGCTGATCGACAGTGGGGAGACGCCAGACATCATCGATGTCATGGACGCACAGGGACAgactCCTCTGATGCTGGCTGTGCTGGGGAGCCACACGGATTGTGTCCACCTGctgctggagaaaggggccACAGCCGACGCGGGGGACAAGAGAGGCAGGACTGCCCTACACAGAGGGGCGGTGATTGGCTGTGAGGACTGTGTGACGGCCCTCCTGGACCACGATGCCTTCGCGCTGTGCCGGGACTTTAAGGGCCGCACCCCCCTGCACCTGGCGGCGGCCTGTGGGCACGTGGAGCTCCTGGGCAGCCTGCTGCAGGCCGCCTTCAATACCGACCCCCTGGACTCCATATTGGACTACAGCGGGTacaccccctcacactgggccTCCTACCACGGGCACGAAGACTGTTTGGAAGTTTTACTTGAACACAAACCATTTAGTATCCAGGAAGGAAACCCCTTCACCCCATTGCACTGTGCTCTAATAAATGGTCATGATGGTCCTGCAGAGCTGTTGGTGGAGTCCATTGGTGCCCAGATCGTGAACAGCAGAGACGCCAAAGGAAGGACCCCACTCCACGCTGCTGCGTTTGCTGAGAACGTGCATGGGCTACAGCTAGTGCTGTCCCAGGGTGCCGACGTCAACACCGTTGACCAGTCCGGGAGGTCTGCACTCATGGTGGCAGCAGACAACGGACAGACCGCCGCCGTGGaaATTTTGTTGCACCGAGCAAAAGCTGACTTGACGCTGCTGGATGTCAACAAGAACACTGCACTGCATCTGGCTTGCAGCAAGGGCCATGAGATGTGTGCCTTGTTGATTCTGGGGGAGACTCACGAGCCGGCCCTCATCAATGCAACTAACAGTGCACTGCAAATGCCCCTGCATATCGCGGCGCGGAACGGCCTGGCCACCGTTGTGCAGGTCCTGCTGAGCCGAGGGGCCACTGTCCTGGCTGTGGACGAGGAGGGCCACACCCCAGCCCTGGCTTGTGCCCCCAACAAGGATGTAGCAGACTGCCTGGCCCTGATCCTCTCTACCATGAAGCCTTTTCCTCCCAAAGACCCCGCTGGCTCCCCCTTCGGCCTGAACCTGCTGAAGCACTGCAGCATCGCGGCCAGCTGTAGCCCCCTGCCCAACGGAAACCTGCGCCACGCCTACGCCAAGGAGCGGCACGGTGCCATCGGCCTCGACGGCTGCTTCTCCGAGTGA

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

GO: NA

KEGG:

id description
K15504 ANKRD52; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008698 True 3039 mRNA 0.59 26 9150060 9170282

Neighbor

gene id symbol gene type direction distance location
AMCG00008697 rnf41,LOC107723732 coding downstream 47180 9081827 ~ 9102880 (-)
AMCG00008699 NA coding downstream 82630 9036933 ~ 9067430 (-)
AMCG00008694 NA coding downstream 114117 9019960 ~ 9035943 (-)
AMCG00008692 NA coding downstream 182176 8958278 ~ 8967884 (-)
AMCG00008690 NA coding downstream 208237 8941500 ~ 8941823 (-)
AMCG00008705 cs,LOC107707042,LOC107715034,LOC107671863 coding upstream 27151 9197433 ~ 9205392 (-)
AMCG00008702 NA coding upstream 52832 9223114 ~ 9229459 (-)
AMCG00008704 NA coding upstream 61844 9232126 ~ 9255654 (-)
AMCG00008703 NA coding upstream 113268 9283550 ~ 9287687 (-)
AMCG00008709 dazap2,LOC106572518,LOC106567170 coding upstream 151295 9321577 ~ 9326719 (-)
G50915 NA non-coding downstream 122 9144344 ~ 9149938 (-)
G50836 NA non-coding downstream 309405 8837359 ~ 8840655 (-)
G50784 NA non-coding downstream 575722 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 766053 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 789098 8357450 ~ 8360962 (-)
G50999 NA non-coding upstream 206290 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 210469 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 217976 9388258 ~ 9388608 (-)
G51005 NA non-coding upstream 218542 9388824 ~ 9389048 (-)
G51006 NA non-coding upstream 218929 9389211 ~ 9389570 (-)
G50788 NA other downstream 490043 8656728 ~ 8660017 (-)
G50739 NA other downstream 778730 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 855706 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 856574 8281215 ~ 8293486 (-)
G50710 NA other downstream 880734 8269023 ~ 8269326 (-)
G51008 NA other upstream 220561 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1168043 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1390584 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1500667 10670949 ~ 10718201 (-)
G51241 NA other upstream 1505474 10675756 ~ 10712485 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022490 ankrd52a coding NC_007134.7 CM002907.2 32362085 ~ 32390742 (-)