AMCG00008700


Basic Information

Item Value
gene id AMCG00008700
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9270362 ~ 9282607 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008700
AAATTTGAATTGTAACGAAAGCAGCTTGGGACGATTTAGCAAGGTGTGGAGGGGATACTCTTACGAAATTACGGGTGAATTGATATAGATATATCATTTTACATAGAGGAAGCCGCGAAAGCAGAGATGGATTCGGCCATGGTCAGTCTGCACAGCCTCTTTGAGCAGCTGCAGGAGCATGTGGAAGTCTTGAGTGAAGGCATCGAGCCACAGTTCATCCAGCTGGCAGTGAATTTCGAGAACTGCCGCCGGCGGTGGCAGCGCTGTGAGCAGGAGCTTGGCAGCTCTAAGGAGGTGCTAGCCAAGGCGGAGACAGAGCGCAGTGCCCTGGAAGTCAAACTCAAACACGCCCGCAACCAGGTGGACGTGGAGATCCGCCGGCGCCAGAAAGCAGAGGCTGACTGCGAGAAACTGGACCGTCAGATCCAGCTGATCAGAGAGCTGCTGATCACAGAGGGGTCCACCAGCATCCAGCTCAACGATGAGCAGAGGTCTGCCCTGGCCTTCCTGAACGCCCGCACCCAGCCCACGCAGCAAAACACCAGTCGCCGACTATCCACAATTGATGAGACTGGGTCCCTCCTGTCTGACATCAGCTACGACAAGACTGATGACTCCTTGGACTGGGATTCCTCTATAGTGAGAACAGTCCGtctgaagaagagagagaagcgaCGCTCCTCCAGACACCATGTTGACGGTCCCCCGGCTGCTGCCAAGAGATCACGTTCCTCTGGCAAGGCAGAAAAGGGCAATGAGTCCATCATCACGAAGACCAAAGTTACAGTCCCTAGCGATGGGGGTCCGATTGAGGCTGTTTCCACCATTGAGACCGTACCCTACTGGACTCGCAGCAGGAGGAAGACTGCTACCCTGCAGGGCTGGGACTCTGAGTCGGGCCTGTCTGAGCACGCGGGAGAAAAGCAGAATCATCCGGAGCTGATACACCACGCCGAGCCTAGCACCCCTCAGGGCAACGGAGGCATTAGGCTGCATGAGTTCGTCTCCAAAACGGTGATCAAGCCCGAGTCCTGTGTACCCTGTGGGAAGAGGATCAAGTTTGGCAAAATCTCTCTCAAATGCCGCGACTGCCGGGTGGTGGCTCACCCTGAGTGCCGTGAGCGCTGCCCCCTGCCCTGCATCCCCAACATGGGCAGCACCCCTGTCAGGATCGGAGAGGGCACCTTGGCTGACTACGTGTCCTCCAGCTCTCCCATGATCCCCTCACTGGTGGTCCACTGTGTCAACGAGATTGAGCAGAGGGGCCTGCATGAGACGGGGCTGTACCGGCTGTCTGGGGCGGAGCGCACCGTGAAGGAGCTGAAGGAGAAGTTCCTGCGGGGGAAGACCATCCCTCTGCTCAGCAAGGTGGATGACATCCACGCCGTGACCGGCCTGCTCAAGGACTTCCTGAGGAACCTCAAGGAGCCGCTGCTGACCTTCCGGCTCAACAGGCCGTTCATGGAGGCTGCAGAAATCTCAGACGACGACAACAGCATCGCCTCCATGTACCAGACCATCAGTGAGCTGCCTCAGCCCAACAGGGACACGCTGGCCTTCCTGGCCATCCACCTGCAGAGggtCGCCCAGAGCCGGGATACCAAAATGGACATCTCCAATCTGGCCCGGGTCTTTGGCCCCACGATAGTTGGCCACGCGGTGCCCGATCCAGACCCCATGACCATCCTACAGGACACTAAACGCCAGCCCAAGGTCATGGAGAGGCTGCTGAACCTGCCCGTGGAGTACTGGAGCCAGTTCGTCATGGTGGAGCAGGAGAACATGAACCCAGACCACATGGTCTTTGAGAACGGCAACACCTACGCCACCCCTGATGGCAAAGTGAGCATGCTGGGGCCCCTGACCACTCCAGAGCACCAGATGAGCAAGACGCCCTCCTCCAGCTCTCTGTCTCAGCGCATGAAGACCACACTCAGCAGAACCACTCCCAAGTTTGGCAGCAAGAGTAAATCTGCAAGCCAGTTCAGTCGACAGGGCAACTTCTTCGCCTCACCACTCCTGAAGTGAAGTGACTCCAGAGTGACATCGGATTGGTAAAACTCACACAGATTCTGATGCGGTCCATGTAACGCCCTGTATTTGTATCATGCTTCCAAATATCTGTAACTAGTGTGAGTTGTTATAAACagttttatgattatttaatcTCTATTTTAAGCTGactcatattttttaatgttcctttgCATATGTGCAGTAATCATGACCAAAGGAGGTGCACAATggaaaagtgatttattttttgtgacaaTTGAAATCCACTGTTCTTGGTGGATTCCTTATAACCATGATTTTGTTATCAGTATTGTAAACCTGTTTAGTCTGCCAGTAACCTGTAACAGCTCAAATTGATGTGCTGAAGTGTATCCACTACATGTTGTCTATGGTACTAAAatatgtggtgtgtgtgtaagtgcGGTTTTGGTACCTTATCAGAATTTGGTACACGTGATTTGCAATGTAAGGAGCATTCATTGAATTGGCCGTTTCAATGAATCCTAGTTCATATTTATACTAAAAGACTTTAAATCTGATCGAATAGACCAACATTTAGGCATTTTCCTCATATGTGACTGTTAGCACTAATGggtattatatttaaagatacatttttaaatgtttcctttcaatcCAAGGGCCTGGGAATCCATACTGGGGTTCCCCGCTGTAAGAGGCTAGAAAAAGCCATTTTGCATGTCCAGTGCTCTTAGTACCAAAATTGTGATGGGTACCAAAAAATGTGATTCCAGTACGTGTCTTTCACCTGCATTAACACACCAGAGTGGTTCACAGTACTGGAAAATCATCTCTGTccactgtaaatatttatgaatggTTGTGATGTTTTATCTGTaacatactttttaaatgagagagGGTGCATCTTTCATCAGTTCTGTTTTCTACAATGTTCATTAAGCAATTGCTCACCTAATCCAACCCAAGTTGGAAGGTTCTGCCTCTTTGTGTGTATGAAGTGATCTCTTCTGTTCCCTCCCTTCCCCACACTTGGGTAAATTATCCTGTCACACATCTTCTGTACCCTTCAGACTTGACATGACATGGCTATCTTTCTTTGGGAAATGATCATAAATCCAAAAGAGGCACAGAAAGGGGTAAAGGCCCCTGTCTCTCTCTAACCGCTCCTTCAAATCTGGTGGTGAAACTGATGAGACTAGTGTTGCACGGTAGTTTGGCCTGTTTCAGGAATTCGGGCAGCTCGAATGTAAGCTGGGACAGCTTAGTCGATGTAACAAGCTTGTTACTTATTTagaaaggggggaggggtggaaaaaaagcattttgcatttaaaatattttgtacaatCTGCACCTGCTGCTTGTAAGAATGGGACAGGATCAGATGCGTACACCCTGGGAGACTTATTGGATTCCCTGCCGTGCTCCATACTAGCTTAAATAACAAACCTTTGATTCTGTTCCTGGAAGAGCTCCTCACAAACGAGCTCAAGGAAACCAAACTACAACACtggaattttgttttaatcattcagAACAAAGAAAGGTGTCTGTCTTGTTTCTATCCAGGTAAAAATGGTGATGGAAACCAGGACCTGTTTGCAGCGAACAACTGctgtacaaaacaataataatctatatACACTTTGAAATAGCAACTGCAGCCATGCTCATTGAACCAGTGTGATATTTGCTTGAACAGTTGCAGGATTtgtattaatcaaataaatgttcTGCATTTGAAAGCCTTTGATCTGTGTTAGGGCAGCAATATTGCACTGTGTTTCGAGCTGTAATCCAATGTCTACATTCACCCGGTATCGAGTGTTGTATTTGCATGCTGTGCTATTTCTTCATAAATATTGGTAAAGAAATCTGTCTCGTTTGGTTACTTTGTACACCTTTCTACGTGACTATGCCTCTATCCTAGTGAAGAGAGACGTGGTTATAGAATGTAGCCTCTTagtgttgcatttttttaaagg

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K16733 RACGAP1, Tum; Rac GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008700 True 3986 mRNA 0.48 17 9270362 9282607

Neighbor

gene id symbol gene type direction distance location
AMCG00008701 coq10a,LOC102221461,LOC106917050,LOC102797363 coding upstream 85832 9175620 ~ 9184530 (+)
AMCG00008695 NA coding upstream 138124 9123241 ~ 9132238 (+)
AMCG00008688 NA coding upstream 357020 8903214 ~ 8913342 (+)
AMCG00008685 NA coding upstream 389194 8866279 ~ 8881168 (+)
AMCG00008683 LOC106581923 coding upstream 429845 8826047 ~ 8840517 (+)
AMCG00008706 NA coding downstream 8081 9290688 ~ 9309599 (+)
AMCG00008708 NA coding downstream 56224 9338831 ~ 9350517 (+)
AMCG00008712 NA coding downstream 106804 9389411 ~ 9391756 (+)
AMCG00008711 NA coding downstream 117879 9400486 ~ 9408758 (+)
AMCG00008715 NA coding downstream 205888 9488495 ~ 9525687 (+)
G50932 NA non-coding upstream 75724 9194404 ~ 9194638 (+)
G50931 NA non-coding upstream 76677 9193015 ~ 9193685 (+)
G50930 NA non-coding upstream 77443 9192530 ~ 9192919 (+)
G50929 NA non-coding upstream 77985 9191777 ~ 9192377 (+)
G50878 LOC100846954 non-coding upstream 275459 8994536 ~ 8994903 (+)
G50983 NA non-coding downstream 70371 9352978 ~ 9354405 (+)
G51000 NA non-coding downstream 109420 9392027 ~ 9398369 (+)
G51065 NA non-coding downstream 358149 9640756 ~ 9715167 (+)
G51094 NA non-coding downstream 509531 9792138 ~ 9794219 (+)
G51129 NA non-coding downstream 690689 9973296 ~ 9975207 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 147550 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 182395 9081827 ~ 9087967 (+)
G50747 NA other upstream 603814 8450166 ~ 8666548 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 945584 8278853 ~ 8324778 (+)
G50583 NA other upstream 1330591 7933829 ~ 7939771 (+)
AMCG00008710 NA other downstream 27479 9310086 ~ 9316151 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other downstream 72485 9355092 ~ 9379579 (+)
AMCG00008725 NA other downstream 632887 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 644780 9927387 ~ 9931515 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 1409770 10692377 ~ 10771675 (+)

Expression


Co-expression Network