AMCG00008702


Basic Information

Item Value
gene id AMCG00008702
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9223114 ~ 9229459 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008702
GTGATTCAAGCTGGCATTTACCCGGACAGCCCCGGCAAAGCGTCTGGTTGCCTACGTCACCGACTTGTAGTTGGCAATGGAATTGCAGCGGACCAGTGTTTCATTGTAGCGGAGGATTAAAGTCAAATTCACCAGGAGAAGTATCAGCTGGCATCCTGAGGAAGATGAAGGGTGGTGTGAGGGCActgtctgtgtgcctgtctgtctgtctgctcctAGCTCTCCCACATGTCAGTCACGGTCGTGGTAGGCATGGACAGGACATGCGCTGTGGAGGTGCCCTTTGCCCGCTCCGAGGCCAACCTCATGGAGCTGATGGAGGTGGTCTGTGAGAGGATGACCGAGTATGGGGAGAGGGTGGACCCCGTCTCCGACCGCAAGACCTACGAGCGCATCTTGTCCCGGGACGGCAAGAAGATGGACCTGTCCCAGACCAAGTTGGACACCCAGGTCACCGCCAGCCTCAAGTTTGCTaTCTGTGTGACCATGCTCTGTACATACCTCATGATGAACTCTGacctccagtccagtccagtcactGAGACTCCTCTACTGGGAGGGAAGGGGGTGTGACTTTGTGACATCCTTCCAGTGACCCCCTCCGCCCCTCCCAGCTCTCAGATCTGCCAGTCAGTGCAATCCTAGACACAGCTCAGTGTTACAGATCAGGTACCTAGAGCTCTGCTGTACCACACATGTCTACAAGTCACAGGCATCTGGTTCCctcatcaatatttttttattcccacACACCTccttacttttttttccccctgatcTGTTGTTGTTATCTGATACCTTAGACCAGGGTGACTTGTATTCAACACAGATCTATTAAAAACGATATAGTGTAAAGGCTACACATCATAAATCTGCATCACAAAAAGTGCTTTATATAAGACAGCTTAATTTTGAAACATTAtacaatgcagaaactgatttTGTAACAGTACAAGAAGCCTGCTAACCACTTACTGGCTCAGTCAATGCTAACGTGGCCTTTCGTCCCTGACTGATGATACCCAAAAATTAACCAGGGCTGGACAACGGCAAAACCAACACACTTGGGGTTCTTCTCAAAATGCCTCaaaattttctttaaatgtgaaataaaccaCATTTCAAAATCCCTGGGGAAAAAACCTGTTTAAAACAGTTCTCTGTGTATATCGATGTTTGAGGTCATTTGAGCTGGCACAAGGCTTTCGCTGTATTGACTGTTTATCTTCTGATTTACATCTAGGGCAAAATCGTGACCAATTAACTACGCAAAATCAGGTTTGATCCATTCATGATGCAAGTGAAACCAGACTGAGTACATCCAGGACTAGAGTTGCTTACCACAGGTATTAGATCTTCATATCTTCCCCCCATCTTCCTTTGTATGTACGCTTTTCCTCCCCAAATATAAAGCATCTAGGCATTTGGCTTCCCTGCTCTGGCACATCTGGACAGCTGTGGACATGGGTGGGGGTGGGAAATGTTAAGGTGTCTCAGAGAGGAAAAAATTTGTCGGGGTTTTGTGGAATGGGGAAAGGGGTTGTGGGTACATTAATGCCTTGGACTCTTAAGTGGGTCACACTCATGTTAGGGCAGGGGATTTATTTGACTTGACATCTCTGAGTACTTTAACTAAACCAACACTCCTCCAGCTGTCTCTGTGTAGAAACCATTACaaatggcatttttattttttattttttttgttttttttaaattttgttttgaaCTTTGAGTGAAGTTGAAATTTAAATCCTTCCACATCCTTCAGTCTGCTCCTCCAAACAGACATGTCTCCTTTCTGTATGACTTTCAGGAAAGGCAAAATAATGTCCCCATTAGGATTTTCATCCAGATAATCCGCATTGATCTGGTTACAGCTCTACAGAGCTGTAAATATCATTCACATACTAGCTATCGAAACATGTACAAAACTACCCTGTATTTAACTTGAATTTATGTTTGCCTGTGAATCTCCAGTCTTTTGACATTGACAATGTACATAGTAACAGGATTCTGTCTCTGGTGGTTCTACATTCCAGCTGAAATCTTTCTGCTCTTGTTTTGTATAAGAggggattttcttttattaaacagtttcttttttgagaaaaatatttCTACATCAATGACTAAAAtgccttttctctcttttgttaaaattaagtaTGTGGGATGTGACAGGTATTTTGCCTTGATATATAGccaaattatttgtttacagGACCTACATCATTCATATAGAATTTTAGAAACACTGAAAGAGACTAATATAAAAGCATGTTCACTGTCGCATTGTCTATACCACATTTACGAGTTggacattaaacaaatacactgcATTCTATAGGTATCCTGTGAAACACGTcacaattaaacacataatGTAGATGTTGATAAAATTCCTGAGATCTGCAGTGCCTTCAAAAATTATTTGGCCACCAGCACTTCTCCTCAGTGGGATTTTGATGCATTAGATagggattttttatttgtgagtCACACACTtcaccccccccgcccccaaccaataagaaaaaaaatggt

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008702 True 2547 mRNA 0.43 4 9223114 9229459

Neighbor

gene id symbol gene type direction distance location
AMCG00008705 cs,LOC107707042,LOC107715034,LOC107671863 coding downstream 17722 9197433 ~ 9205392 (-)
AMCG00008698 LOC105017093,LOC106583345,LOC106565408 coding downstream 52832 9150060 ~ 9170282 (-)
AMCG00008697 rnf41,LOC107723732 coding downstream 120234 9081827 ~ 9102880 (-)
AMCG00008699 NA coding downstream 155684 9036933 ~ 9067430 (-)
AMCG00008694 NA coding downstream 187171 9019960 ~ 9035943 (-)
AMCG00008704 NA coding upstream 2667 9232126 ~ 9255654 (-)
AMCG00008703 NA coding upstream 54091 9283550 ~ 9287687 (-)
AMCG00008709 dazap2,LOC106572518,LOC106567170 coding upstream 92118 9321577 ~ 9326719 (-)
AMCG00008713 NA coding upstream 184239 9413698 ~ 9417891 (-)
AMCG00008717 NA coding upstream 302374 9531833 ~ 9554934 (-)
G50915 NA non-coding downstream 73176 9144344 ~ 9149938 (-)
G50836 NA non-coding downstream 382459 8837359 ~ 8840655 (-)
G50784 NA non-coding downstream 648776 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 839107 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 862152 8357450 ~ 8360962 (-)
G50999 NA non-coding upstream 147113 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 151292 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 158799 9388258 ~ 9388608 (-)
G51005 NA non-coding upstream 159365 9388824 ~ 9389048 (-)
G51006 NA non-coding upstream 159752 9389211 ~ 9389570 (-)
G50788 NA other downstream 563097 8656728 ~ 8660017 (-)
G50739 NA other downstream 851784 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 928760 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 929628 8281215 ~ 8293486 (-)
G50710 NA other downstream 953788 8269023 ~ 8269326 (-)
G51008 NA other upstream 161384 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1108866 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1331407 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1441490 10670949 ~ 10718201 (-)
G51241 NA other upstream 1446297 10675756 ~ 10712485 (-)

Expression


Co-expression Network